View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_1 (Length: 848)
Name: NF7053_low_1
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 760
Target Start/End: Original strand, 5774304 - 5775046
Alignment:
| Q |
11 |
acatcatcatggaaagaagaaaggtgaaaaatcagagatgaagcacatgtgcgtgtgcagaaatttttcaaatgcctaggtgaaatactattatatatat |
110 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5774304 |
acatcatcatggaaagaagaaaggttaaaaatcagagatgaagcacatgtgtgtgtgcagaaatttttcaaatgcctaggtgaaatactattatata--- |
5774400 |
T |
|
| Q |
111 |
aactttactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnn-ataactgacctgagtttctttaacagtgtatctctcaagt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5774401 |
-actttactcattcgattagttacattctaaataacacaaaatttccacaattcctttttataactgacctgagtttctttaacagtgtatctctcaagt |
5774499 |
T |
|
| Q |
210 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5774500 |
acggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcataca |
5774599 |
T |
|
| Q |
310 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttgga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
5774600 |
ctaacaacagttacctcaaccataaacaaccaccacagaatttgattgattgatcgat----tgatgaattacctgaaaaacttccaaatgaaatttgga |
5774695 |
T |
|
| Q |
410 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaa |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||| || ||||||||| |
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| T |
5774696 |
gtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaa |
5774795 |
T |
|
| Q |
510 |
gtccttaaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtctt |
609 |
Q |
| |
|
||||| |||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||| |
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|
| T |
5774796 |
gtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtctt |
5774895 |
T |
|
| Q |
610 |
ctctcttcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccat |
709 |
Q |
| |
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|||| |||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || | |||||||||||| |
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| T |
5774896 |
ctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatccctaagcatctccat |
5774995 |
T |
|
| Q |
710 |
caccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
760 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
5774996 |
caccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
5775046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 441 - 829
Target Start/End: Original strand, 5775102 - 5775490
Alignment:
| Q |
441 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
540 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775102 |
ttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtccttaaggtgtggacgtcaaccttatcat |
5775201 |
T |
|
| Q |
541 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaaattctcacaatatgtctcctt |
640 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
5775202 |
tctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctcttcaagttctcaccatatgtctcctt |
5775301 |
T |
|
| Q |
641 |
gaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcaccttcttccggatcctatacagctttgat |
740 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5775302 |
gaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcgcgaagcatctccatcaccttcttccggatcctatacagctttgat |
5775401 |
T |
|
| Q |
741 |
atttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaataaaaaacagtacccaagtataaatagaggcaaaaca |
829 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5775402 |
atttcatcctccgaaaacaccattgtggagtcgctcttccaagtccctctaatagaaaacagtacccaagtataaatagaggcaaaaca |
5775490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 116 - 827
Target Start/End: Original strand, 5768137 - 5768835
Alignment:
| Q |
116 |
tactcattcgattagttacattctaaataacacaaaatttccacaannnnnnnnataactgacctgagtttctttaacagtgtatctctcaagtacggtt |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
5768137 |
tactcattcgattagtcacattctaaataacacaa--tttcatcaattttatttataactgacctgagtttctttaacggtgtatctctcgagtaaggtt |
5768234 |
T |
|
| Q |
216 |
ttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttacattaaccagcaattcagcctcctgcaagcacgcacacactaaca |
315 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||| ||||| ||||||||| |
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| T |
5768235 |
ttcttctcattgtcggtcagcacctgatgttctggcacaagctcgtgatatcttacgttaaccagcaattcagcctccttcaagaacgcatacactaaca |
5768334 |
T |
|
| Q |
316 |
acagttacctcaaccataaacaaccaccacagaatttgattgatcgatcgatcgaatgatgaattacctgaaaaacttccaaatgatatttggagtcgaa |
415 |
Q |
| |
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|| |||||||||||||| ||||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5768335 |
acggttacctcaaccattaacaaccaccacaaaatttgattgattgatggat----tgatgaattacctgaaaaacttccaaatgaaatttggagtcgat |
5768430 |
T |
|
| Q |
416 |
ctgagagatactgttccatgccatgttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtcctt |
515 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||| |||||| ||||||| |
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| T |
5768431 |
ttcagagag---------tgccatgttagtaaggctggtctggcaaacgatgatggctctgtagacattctcggagttcatacgtttggtgcaagtcctg |
5768521 |
T |
|
| Q |
516 |
aaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctct |
615 |
Q |
| |
|
|||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||| ||||| || || |||||||||||||||||||| | |
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|
| T |
5768522 |
aaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctttttcgccttgttgatgacaaggtcttctctat |
5768621 |
T |
|
| Q |
616 |
tcaaattctcacaatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattcctgtcacgaagcatctccatcacctt |
715 |
Q |
| |
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||| | ||| | |||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| || | |||||||||||||||| | |
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|
| T |
5768622 |
tcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattcctatctctaagcatctccatcaccgt |
5768721 |
T |
|
| Q |
716 |
cttccggatcctatacagctttgatatttcatcctccgaaaacaccatcgtggagtcgctcttccaagtccctctaata--aaaaacagtacccaagtat |
813 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||||| |
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|
| T |
5768722 |
cttccggatcctatacagcttagatatttcatcctccgaaaacaccattgtggagtcgctcttctaagtccctctaataggaaaaacagaactcaagtat |
5768821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 465800 - 465679
Alignment:
| Q |
173 |
actgacctgagtttctttaacagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagcttgtgatatcttaca |
272 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| | |||||||||||| ||||| | || | ||||||||| ||||||||| || | | ||| | |
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|
| T |
465800 |
actgacctgagtttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttata |
465701 |
T |
|
| Q |
273 |
ttaaccagcaattcagcctcct |
294 |
Q |
| |
|
||||||||||| || ||||||| |
|
|
| T |
465700 |
ttaaccagcaactctgcctcct |
465679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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