View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_11 (Length: 415)
Name: NF7053_low_11
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_11 |
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| [»] scaffold0774 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 402
Target Start/End: Original strand, 26073207 - 26073588
Alignment:
| Q |
21 |
taacatgcttgcaagcagccctgatattagaaatggatgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcag |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073207 |
taacatgcttgcaagcagccctgatcttagaaatggatgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcag |
26073306 |
T |
|
| Q |
121 |
atgcatatactcctctttaagaaagttatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
220 |
Q |
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||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26073307 |
atgcatatactcccctttaagcaaggtatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
26073406 |
T |
|
| Q |
221 |
gtaacagtgcacaatttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacccctatggttagcaattaacccaaagccta |
320 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26073407 |
gtaactgtgcacagtttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacctctatggttagcaattaacccaaagccta |
26073506 |
T |
|
| Q |
321 |
gaatcnnnnnnngtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
26073507 |
aaatctttttttgtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttctgaattgaggtcca |
26073588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 17386177 - 17386232
Alignment:
| Q |
347 |
tcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17386177 |
tcatcaatataatgagctgtcacacacatataattcatgttttgaattgatgtcca |
17386232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 17386070 - 17386139
Alignment:
| Q |
240 |
taattccccaatctttcaagcatttttctaaggctttacctatggtgtcacccctatggttagcaattaa |
309 |
Q |
| |
|
|||| |||||||| |||| ||| |||||||||||| | |||||||| ||||| |||||| ||||||||| |
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| T |
17386070 |
taataccccaatccttcatgcaattttctaaggctattcctatggtttcacctttatggtcagcaattaa |
17386139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 402
Target Start/End: Complemental strand, 1670495 - 1670114
Alignment:
| Q |
21 |
taacatgcttgcaagcagccctgatattagaaatggatgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcag |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1670495 |
taacatgcttgcaagcagccctgatcttagaaatggatgaatctataagagataatccatcaaaaacaatcaaattcaagatatgggcacaacaccgcag |
1670396 |
T |
|
| Q |
121 |
atgcatatactcctctttaagaaagttatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
220 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1670395 |
atgcatatactcccctttaagcaaggtatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
1670296 |
T |
|
| Q |
221 |
gtaacagtgcacaatttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacccctatggttagcaattaacccaaagccta |
320 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670295 |
gtaactgtgcacagtttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacccctatggttagcaattaacccaaagccta |
1670196 |
T |
|
| Q |
321 |
gaatcnnnnnnngtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
1670195 |
aaatctttttttgtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttctgaattgaggtcca |
1670114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 21 - 402
Target Start/End: Original strand, 44271984 - 44272365
Alignment:
| Q |
21 |
taacatgcttgcaagcagccctgatattagaaatggatgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcag |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44271984 |
taacatgcttgcaagcagccctgatcttagaaatggatgaatctataagagataatccatcagaaacaatcaaattcaagatatgggcacaacaccgcag |
44272083 |
T |
|
| Q |
121 |
atgcatatactcctctttaagaaagttatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
220 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44272084 |
atgcatatactcccctttaagcaaggtatttccattccaagcactcatatttctagtcaaataagatagagcaacattattagagctagcattatctact |
44272183 |
T |
|
| Q |
221 |
gtaacagtgcacaatttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacccctatggttagcaattaacccaaagccta |
320 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44272184 |
gtaactgtgcacagtttagtaattccccaatctttcaagcatttttctaaggctttacctatggtgtcacctctatggttagcaattaacccaaagccta |
44272283 |
T |
|
| Q |
321 |
gaatcnnnnnnngtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
44272284 |
aaatctttttttgtaattcccacccttcatcaatgaaatgacctgtcacacacatgtaattcatgttctgaattgaggtcca |
44272365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0774 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0774
Description:
Target: scaffold0774; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 5634 - 5579
Alignment:
| Q |
347 |
tcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5634 |
tcatcaatataatgagctgtcacacacatataattcatgttttgaattgatgtcca |
5579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 20484006 - 20483951
Alignment:
| Q |
347 |
tcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20484006 |
tcatcaatataatgagctgtcacacacatataattcatgttttgaattgatgtcca |
20483951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 5884107 - 5884052
Alignment:
| Q |
347 |
tcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5884107 |
tcatcaatataatgagctgtcacacacatataattcatgttttgaattgatgtcca |
5884052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 51512613 - 51512658
Alignment:
| Q |
357 |
aatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51512613 |
aatgagctgtcacacacatataattcatgttttgaattgatgtcca |
51512658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 27709840 - 27709895
Alignment:
| Q |
347 |
tcatcaatgaaatgacctgtcacacacatgtaattcatgttttgaattgatgtcca |
402 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27709840 |
tcatcaatataatgagttgtcacacacatataattcatgttttgaattgatgtcca |
27709895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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