View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_12 (Length: 403)
Name: NF7053_low_12
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 36950614 - 36950250
Alignment:
| Q |
20 |
cagggcagtaggatcaagttcaaaataatctcttgaaacaacttccttttcaactctttcattacatcttgaaacaacatcaaaacaatataaataattg |
119 |
Q |
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| T |
36950614 |
cagggcagtaggatcaagttcaaaataatctcttgaaacaacttccttttcaactctttcattacatcttgaaacaacatccaaacaatataaataatta |
36950515 |
T |
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| Q |
120 |
tgtttacgtactataatttcctgatctgtactagctaacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcatttgttgtc |
219 |
Q |
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| T |
36950514 |
tgtttatgtactataatttcctgatctgtacta----acatttatctttttctattgctttacatgcaatgtttgtatcttggtcatttcatttgttgtg |
36950419 |
T |
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| Q |
220 |
atttacaacaaatggatggaggttggtttggataaagattggtttaaagggaggaaagtttggtttaaatcaattatgtgtacaagatgttcattacata |
319 |
Q |
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| T |
36950418 |
atttacaacaaatggatggaggttggtttggatgaagattggtttaaagggaggcaagtttggtttaaatcaattatgtgtacaagatgttcattacata |
36950319 |
T |
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| Q |
320 |
caacagcataaacaatcatcattaaacagataatctactctagatttgtcatttaattttttaatgatg |
388 |
Q |
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| T |
36950318 |
caacagcataaacaatcatcattaaacagataatctactctagatttgtcatttaattttttaatgatg |
36950250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 36950637 - 36950729
Alignment:
| Q |
31 |
gatcaagttcaaaataatctcttgaaacaacttccttttcaactctttcattacatcttgaaacaacatcaaaacaatataaataattgtgttt |
124 |
Q |
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| T |
36950637 |
gatcaattttaaaacaacctcttgaaacaacttccttttcagcgttttcattacaccttgaaaaaacatcaaaacaa-ataaataattgtgttt |
36950729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 33292823 - 33292881
Alignment:
| Q |
155 |
taacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcattt |
213 |
Q |
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| T |
33292823 |
taacatttatcattttctattgttttacatgcaatggttgtatctaggtcatttcattt |
33292881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 13704354 - 13704299
Alignment:
| Q |
156 |
aacatttatccttttctactgctttacatgcaatgtttttatcttggtcatttcat |
211 |
Q |
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| T |
13704354 |
aacatttatcgttttatattggtttacatgcaatgtttatatctaggtcatttcat |
13704299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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