View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7053_low_17 (Length: 338)
Name: NF7053_low_17
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 18416120 - 18416455
Alignment:
| Q |
1 |
tcaacttcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattgtaccgtcgccgatacttaaaacccattctgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18416120 |
tcaacttcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattgtaccgtcgccgatacttaaaacccattctgaga |
18416219 |
T |
|
| Q |
101 |
attttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctcatgttctttgttaatctaagcacctcgtagtgtctccaaagatgcgaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18416220 |
attttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctcatgttctttgttaatctaagcacctcgcagtgtctccaaagatgcgaaga |
18416319 |
T |
|
| Q |
201 |
attaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccaccaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18416320 |
attaatagtggcatgaacaatttctggtcttatacctctaggaatcacaggtaatatttgccgaaaatctccaccaaataccacgactttaccaccaaat |
18416419 |
T |
|
| Q |
301 |
ggaatgtatttgtttctcttatccacctccttcatc |
336 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18416420 |
ggaatgtttttgtttctcttatccacctccttcatc |
18416455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 335
Target Start/End: Original strand, 11643060 - 11643322
Alignment:
| Q |
73 |
tcgccgatacttaaaacccattctgagaattttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctcatgttctttgttaatctaagca |
172 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||| | | || |||||| | | || |||||| |||||| ||||||||||| || || |||| | |
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|
| T |
11643060 |
tcgcctatacttaaaacccattctgaaaattgtctttttgcttcaatgtctaataccgacgcaccagacaaaagcctcatgttcttagtcaaggtaagaa |
11643159 |
T |
|
| Q |
173 |
cctcgtagtgtctccaaagatgcgaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctcc |
272 |
Q |
| |
|
|||| | | ||||| || | |||||||| ||||| ||||||| |||||||||||| | ||| | ||||| ||||||||||| | |||||||||||| |
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|
| T |
11643160 |
cctcacaataactccatagttttgaagaattgatagtagcatgaatgatttctggtcttgtgcctttaggaattacaggtaatatcttcctaaaatctcc |
11643259 |
T |
|
| Q |
273 |
accaaataccacgactttaccaccaaatggaatgtatttgtttctcttatccacctccttcat |
335 |
Q |
| |
|
||||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
11643260 |
accaaatacaacgactttacctccaaaagggatgtatttgtttctcttgcccacctccttcat |
11643322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 21799300 - 21799032
Alignment:
| Q |
1 |
tcaacttcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattgtaccgtcgccgatacttaaaacccattctgaga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21799300 |
tcaacatcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattataccgtcgccgatacttaaaacccattctgaga |
21799201 |
T |
|
| Q |
101 |
attttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctcatgttctttgttaatctaagcacctcgtagtgtctccaaagatgcgaaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21799200 |
attttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctcatgttctttgttaatctaagcacctcgcagtgtctccaaagatgcgaaga |
21799101 |
T |
|
| Q |
201 |
attaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
21799100 |
attaatagtggcatgaacaatttctggtcttatacctctaggaatcataggtaatatttgcctaaaatc |
21799032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 51 - 333
Target Start/End: Complemental strand, 2701530 - 2701248
Alignment:
| Q |
51 |
attgtcttcccctattgtaccgtcgccgatacttaaaacccattctgagaattttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctc |
150 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||| ||||| |||| ||| | | || |||||| | | || |||||| |||||| ||| |
|
|
| T |
2701530 |
attgtcttcccctattcgtccatcgcctatacttaaaacccaatctgaaaattgtctctttgcttcaatgtctaataccgacgcaccagacaaaagcctc |
2701431 |
T |
|
| Q |
151 |
atgttctttgttaatctaagcacctcgtagtgtctccaaagatgcgaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacag |
250 |
Q |
| |
|
|||||||| || || |||| ||||| | | ||||| || | |||||||| ||||| |||||||| |||| ||||||| | ||| | ||||| |||| |
|
|
| T |
2701430 |
atgttcttagtcaaggtaagaacctcacaataactccatagttttgaagaattgatagtagcatgaacgatttttggtcttgtgcctttaggaattacag |
2701331 |
T |
|
| Q |
251 |
gtaatatttgcctaaaatctccaccaaataccacgactttaccaccaaatggaatgtatttgtttctcttatccacctccttc |
333 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| |||||||||| ||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
2701330 |
gtaatatctgcctaaaatctccaacaaatacaacgactttacgtccaaaagggatgtatttgtttctcttgtccacctccttc |
2701248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 333
Target Start/End: Complemental strand, 18095848 - 18095714
Alignment:
| Q |
199 |
gaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccaccaa |
298 |
Q |
| |
|
||||| ||||| |||||||| | || ||||||| | ||| | |||| ||||||||||| ||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
18095848 |
gaattgatagtagcatgaacgacttttggtcttgtgcctttacgaattacaggtaatatctgcctaaaatctccaccaaatacaatgactttacctccaa |
18095749 |
T |
|
| Q |
299 |
atggaatgtatttgtttctcttatccacctccttc |
333 |
Q |
| |
|
| || ||||||||||||||||| |||| ||||||| |
|
|
| T |
18095748 |
aagggatgtatttgtttctcttgtccatctccttc |
18095714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 183 - 316
Target Start/End: Original strand, 47400022 - 47400155
Alignment:
| Q |
183 |
tctccaaagatgcgaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaatacc |
282 |
Q |
| |
|
||||||||||| |||||||||||| || ||||| |||| | |||| | ||| ||| ||| || || |||||||| || || || || |||||||| ||| |
|
|
| T |
47400022 |
tctccaaagatacgaagaattaattgtcgcatgtacaacctatggtatgatatctccgggtattactggtaatatctgtctgaagtcaccaccaaaaacc |
47400121 |
T |
|
| Q |
283 |
acgactttaccaccaaatggaatgtatttgtttc |
316 |
Q |
| |
|
|| |||||||||||||||||||||| ||| |||| |
|
|
| T |
47400122 |
acaactttaccaccaaatggaatgtttttatttc |
47400155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 333
Target Start/End: Original strand, 14165226 - 14165508
Alignment:
| Q |
51 |
attgtcttcccctattgtaccgtcgccgatacttaaaacccattctgagaattttcttctgtcctcgatgtctgcttcagatgcaccattcaaaagtctc |
150 |
Q |
| |
|
|||||||||||||||| || ||||| | |||||||||||||||||| ||||||||| | | || |||||| | | || |||||| |||||| ||| |
|
|
| T |
14165226 |
attgtcttcccctattcgtccatcgcctaaacttaaaacccattctgaaaattttctttttgcttcaatgtctaataccgacgcaccaaacaaaagcctc |
14165325 |
T |
|
| Q |
151 |
atgttctttgttaatctaagcacctcgtagtgtctccaaagatgcgaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacag |
250 |
Q |
| |
|
|||||||| || || |||| ||||| | | ||||| || | |||||||| ||||| || ||||| |||||||||||| | ||| | ||||| ||| |
|
|
| T |
14165326 |
atgttcttagtcaaggtaagaacctcacaataactccatagttttgaagaattgatagtagcgtgaacgatttctggtcttgtgcctttaggaattacat |
14165425 |
T |
|
| Q |
251 |
gtaatatttgcctaaaatctccaccaaataccacgactttaccaccaaatggaatgtatttgtttctcttatccacctccttc |
333 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
14165426 |
gtaatatctgcctaaaatctccaccaaatacaacgactttacctccaaaagggatgtatttgtttctcttgtccacctccttc |
14165508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21001478 - 21001551
Alignment:
| Q |
1 |
tcaacttcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattgtaccgtc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21001478 |
tcaacttcaaccaacaaatctgttggaatagtaattgttttgtccaccagattgtcttcccctattgtaccgtc |
21001551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 196 - 335
Target Start/End: Complemental strand, 7781533 - 7781394
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccac |
295 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||| | ||| | ||||| ||| |||||| ||| ||||||||||||||||||| |||| |||||| | |
|
|
| T |
7781533 |
gaagaattgatagtagcatgaacgatttctggtcttctgcctttaggaattacatataatatctgcataaaatctccaccaaatacaacgaatttacctc |
7781434 |
T |
|
| Q |
296 |
caaatggaatgtatttgtttctcttatccacctccttcat |
335 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
7781433 |
caaaagggatgtatttgtttctcttgtccacctccttcat |
7781394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 196 - 335
Target Start/End: Original strand, 8561449 - 8561588
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccac |
295 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||| | ||| | ||||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
8561449 |
gaagaattgatagtagcatgaacgatttctggtcttctgcctttaggaattacatgtaatatctgcctaaaatctccatcaaatacaacgactttacctc |
8561548 |
T |
|
| Q |
296 |
caaatggaatgtatttgtttctcttatccacctccttcat |
335 |
Q |
| |
|
|||| || |||||||| ||||||||||||| ||||||||| |
|
|
| T |
8561549 |
caaaagggatgtatttttttctcttatccatctccttcat |
8561588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 333
Target Start/End: Complemental strand, 1198773 - 1198636
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccac |
295 |
Q |
| |
|
|||||||| ||||| |||||||| ||| |||||||| | ||| | ||||| ||||||||||| |||||||||||||||||||||| || |||||| | | |
|
|
| T |
1198773 |
gaagaattgatagtagcatgaacgattactggtcttgtgcctttaggaattacaggtaatatctgcctaaaatctccaccaaatataacaactttaactc |
1198674 |
T |
|
| Q |
296 |
caaatggaatgtatttgtttctcttatccacctccttc |
333 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||| |
|
|
| T |
1198673 |
caaaagggatgtatttgtttctcttatccacctccttc |
1198636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 196 - 327
Target Start/End: Complemental strand, 11930288 - 11930157
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccac |
295 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||| | ||| | ||||| ||| ||||||| ||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
11930288 |
gaagaattgatagtagcatgaacgatttatggtcttctgcctttaggaattacatgtaatatctgcctaaaatctccatcaaatacaacgactttacctc |
11930189 |
T |
|
| Q |
296 |
caaatggaatgtatttgtttctcttatccacc |
327 |
Q |
| |
|
|||| || ||||||||||||||||| |||||| |
|
|
| T |
11930188 |
caaaagggatgtatttgtttctcttgtccacc |
11930157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 18001438 - 18001523
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaatac |
281 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18001438 |
gaagaattgatagtagcatgaacgatttctggtcttgtgcctttaggaattacaggtaatatctgcctaaaatctccaccaaatac |
18001523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 20640966 - 20641051
Alignment:
| Q |
196 |
gaagaattaatagtggcatgaacaatttctggtcttatacctctgggaatcacaggtaatatttgcctaaaatctccaccaaatac |
281 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||| | ||| | ||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20640966 |
gaagaattgatagtagcatgaacgatttctggtcttgtgcctttaggaattacaggtaatatctgcctaaaatctccaccaaatac |
20641051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 1559944 - 1560003
Alignment:
| Q |
243 |
aatcacaggtaatatttgcctaaaatctccaccaaataccacgactttaccaccaaatgg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
1559944 |
aatcacaggtaatatttgcctaaaatctccacccaatacgacaactttacctccaaatgg |
1560003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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