View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7053_low_19 (Length: 316)

Name: NF7053_low_19
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7053_low_19
NF7053_low_19
[»] chr1 (3 HSPs)
chr1 (1-304)||(10555208-10555511)
chr1 (127-256)||(29201108-29201237)
chr1 (156-255)||(23297813-23297912)
[»] chr2 (2 HSPs)
chr2 (127-255)||(17072206-17072330)
chr2 (179-238)||(19315330-19315387)
[»] chr4 (4 HSPs)
chr4 (153-256)||(42845296-42845398)
chr4 (161-255)||(48546137-48546230)
chr4 (179-225)||(49863058-49863103)
chr4 (45-105)||(12105289-12105347)
[»] chr3 (3 HSPs)
chr3 (170-256)||(14857883-14857966)
chr3 (127-190)||(35575240-35575304)
chr3 (153-254)||(45972403-45972504)
[»] chr5 (1 HSPs)
chr5 (127-256)||(11777411-11777535)
[»] chr7 (2 HSPs)
chr7 (146-254)||(21774052-21774156)
chr7 (206-259)||(44570123-44570175)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 10555208 - 10555511
Alignment:
Q  1 gaggggtggggcgaaggacaaggatgaggcggaggcggcgacattggtggtggtaaaggagtgtggatgatgtggtgatgagatagagaggagtgagaga 100  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10555208 gaggggtggggcgaacggcaaggatgaggcggaggcggcgacattggtggtggtaaaggagtgtggatgatgtggtgatgagatagagagaagtgagaga 10555307  T
Q  101 gatctattaaagtgttagggtgtgttttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcata 200  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10555308 gatctgttaaagtgttagggtgtgttttgcagaggaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctatcata 10555407  T
Q  201 taagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttccttgttgatgatcttgcttttgttgtatcacaggttgctaaactgat 300  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  10555408 taagggtgtgtacaagagcggtatgggaaaaagggtgtctatgaatcatttaccttcttgatgatcgtgcttttgttgtatcgcaggttgctaaactgat 10555507  T
Q  301 gtcc 304  Q
    ||||    
T  10555508 gtcc 10555511  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 29201108 - 29201237
Alignment:
Q  127 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattacc-aaaataccctgtcatataagggtgtgtacaagagtggtatg 225  Q
    |||||||| |||| |||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| || |  ||||||||     
T  29201108 ttgcagaggaggaatggagagagtgacaggattgaaaaaaagggtttgcgaaattaccaaaaataccctgccatataagggtgtatagagaagtggtat- 29201206  T
Q  226 ggaaaaagggtgtgtatgaatcattttcctt 256  Q
    ||||||||||||| |||||||||||||||||    
T  29201207 ggaaaaagggtgtttatgaatcattttcctt 29201237  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 23297813 - 23297912
Alignment:
Q  156 gattgaaaagaagggtttgcgaaattaccaaaa-taccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcc 254  Q
    ||||||||| |||| ||||| |||||||||||| |||||| |||||||||||||| || |  |||||||||  ||||||||||| |||||||||||||||    
T  23297813 gattgaaaaaaaggatttgcaaaattaccaaaaataccctctcatataagggtgtatagagaagtggtatga-aaaaagggtgtttatgaatcattttcc 23297911  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 17072330 - 17072206
Alignment:
Q  127 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgg 226  Q
    |||||||  ||||||||| || |||||||||||||||| | ||||||||||||||||||| |||||||| |||||  ||| || ||||||||||||||||    
T  17072330 ttgcagatgaggattggagagggtgaaaggattgaaaata-gggtttgcgaaattaccaatataccctgccatat-ggggggtatacaagagtggtatgg 17072233  T
Q  227 gaaaaagggtgtgtatgaatcattttcct 255  Q
    |  ||||| ||| ||||||||||||||||    
T  17072232 g--aaaggatgtctatgaatcattttcct 17072206  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 19315387 - 19315330
Alignment:
Q  179 attaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgt 238  Q
    |||||||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  19315387 attaccaaaataccctctcacataagg-tgtatacaagagtggtat-ggaaaaagggtgt 19315330  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 256
Target Start/End: Complemental strand, 42845398 - 42845296
Alignment:
Q  153 aaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcatttt 252  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||  | ||| |||| | || || ||||||||||| |||||||||| |||||||||||||    
T  42845398 aaggattgaaaaaaagtgtttgcgaaattaccaaaataccttgctagataggggtatatagaaaagtggtatggg-aaaagggtgtttatgaatcatttt 42845300  T
Q  253 cctt 256  Q
    ||||    
T  42845299 cctt 42845296  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 161 - 255
Target Start/End: Original strand, 48546137 - 48546230
Alignment:
Q  161 aaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcct 255  Q
    |||||||| |||||| ||||||||||||||||||| || ||| |||||| || || |||| ||| | ||||| ||||| ||||||||||||||||    
T  48546137 aaaagaagtgtttgctaaattaccaaaataccctgccagataggggtgtatagaaaagtgatat-gaaaaaacggtgtttatgaatcattttcct 48546230  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 49863103 - 49863058
Alignment:
Q  179 attaccaaaataccctgtcatataagggtgtgtacaagagtggtatg 225  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  49863103 attaccaaaataccctctcatat-agggtgtgtacaagaatggtatg 49863058  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 12105289 - 12105347
Alignment:
Q  45 tggtggtggtaaaggagtgtggatgatgtggtgatgagatagagaggagtgagagagatct 105  Q
    |||||||||| |||||||||||| | ||||||| |||||||||||  ||||||||| ||||    
T  12105289 tggtggtggttaaggagtgtggaggttgtggtggtgagatagaga--agtgagagaaatct 12105347  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 14857883 - 14857966
Alignment:
Q  170 gtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttcctt 256  Q
    ||||||||||||||||| ||||||||||||||  ||| || ||||||||||||||  || ||||| ||| |||||||||||||||||    
T  14857883 gtttgcgaaattaccaatataccctgtcatat-ggggggtatacaagagtggtat--gagaaaggatgtctatgaatcattttcctt 14857966  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 35575304 - 35575240
Alignment:
Q  127 ttgcagagaaggattggaaagagtgaaaggattgaaaagaaggg-tttgcgaaattaccaaaata 190  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||| |||| |||||||| ||||||    
T  35575304 ttgcagaggaggattggagagagtgaaaggattgaaaaaaagggatttgtgaaattactaaaata 35575240  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 45972403 - 45972504
Alignment:
Q  153 aaggattgaaaagaagg-gtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattt 251  Q
    |||||||||||| || | |||||  |||||| |||||||||||| || ||| |||||| || || ||||||||| | |||||| ||| ||||||||||||    
T  45972403 aaggattgaaaaaaaagtgtttgtaaaattatcaaaataccctgccagataggggtgtatagaaaagtggtatgtg-aaaaggatgtttatgaatcattt 45972501  T
Q  252 tcc 254  Q
    |||    
T  45972502 tcc 45972504  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 11777535 - 11777411
Alignment:
Q  127 ttgcagagaaggattggaaagagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgg 226  Q
    ||||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||| |||||||| |||||   ||   |||||||||||| |||||||||     
T  11777535 ttgcagaga-ggattggagagagtgaaagggttgaaga-aagggtttgtgaaatgaccaaaatgccctgc--taatggggtgtgtacaaaagtggtatga 11777440  T
Q  227 gaaaaagggtgtgtatgaatcattttcctt 256  Q
    || || |||||| |||||||||||||||||    
T  11777439 gacaa-gggtgtctatgaatcattttcctt 11777411  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 21774156 - 21774052
Alignment:
Q  146 agagtgaaaggattgaaaagaagggtttgcgaaattaccaaaataccctgtcatataagggtgtgtacaagagtggtatgggaaaaagggtgtgtatgaa 245  Q
    ||||||||||||||||| | ||||||||| |||| ||||||||| |||| ||  ||  |||||||||||| ||||||||||| | |||||||| ||||||    
T  21774156 agagtgaaaggattgaaga-aagggtttgtgaaaataccaaaatgccct-tctaatg-gggtgtgtacaaaagtggtatggg-acaagggtgtttatgaa 21774061  T
Q  246 tcattttcc 254  Q
    |||||||||    
T  21774060 tcattttcc 21774052  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 44570123 - 44570175
Alignment:
Q  206 gtgtgtacaagagtggtatgggaaaaagggtgtgtatgaatcattttccttgtt 259  Q
    |||||||||| ||||||||||  ||| |||||| ||||||||||||||||||||    
T  44570123 gtgtgtacaaaagtggtatggctaaa-gggtgtttatgaatcattttccttgtt 44570175  T

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