View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_21 (Length: 295)
Name: NF7053_low_21
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_21 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 26836221 - 26835945
Alignment:
| Q |
7 |
gttgtctatagtcgaagctcgaaagaagtcactcaaaaacaattctaaacaagatttattgagcttcttggtaaaagaaaatagtgatgttagccaatct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26836221 |
gttgtctatagtcgaagctcgaaagaagtcactcaaaaacaattctaaacaagatttattgagcttcttggtaaaagaaaatagtgatgttagccaatct |
26836122 |
T |
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| Q |
107 |
gcaaagacattaacaacacgagaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgc |
206 |
Q |
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| T |
26836121 |
gcaaagacattaacaacacgagaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgc |
26836022 |
T |
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| Q |
207 |
ttcttgccacacatgaagattggcaaaatcaattaagagaagagattaaaggagttgtgggaaacaatgagtttgat |
283 |
Q |
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| T |
26836021 |
ttcttgccacacatgaagattggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgagtttgat |
26835945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 6973181 - 6973227
Alignment:
| Q |
137 |
gatgaatgcaaaactttcttctttggtggacatgaaacaacagcact |
183 |
Q |
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| T |
6973181 |
gatgaatgcaaaacattcttctttgctggacatgaaacaactgcact |
6973227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 45421154 - 45420875
Alignment:
| Q |
7 |
gttgtctatagtcgaagctcgaaagaagtcactcaaaaacaattctaaacaagatttattgagcttcttggtaaaagaaaatagtgatgttagccaatct |
106 |
Q |
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| T |
45421154 |
gttgtctattgtcgaagctcgaaagaagtcactgaaaaacaattcttaccaagatttattgagtttgttgctaaaagaaaatagtgatgttagccaatct |
45421055 |
T |
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| Q |
107 |
gcaaagacattaacaacacgagaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgc |
206 |
Q |
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| T |
45421054 |
gcaaagacattaacaacacgagaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgc |
45420955 |
T |
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| Q |
207 |
ttcttgccacacatgaagattggcaaaatcaattaagagaagagattaaaggagttgtgggaaacaatgagtttgatgtc |
286 |
Q |
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| T |
45420954 |
ttcttgctacacatgaagattggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgagtttgatgtc |
45420875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 109 - 283
Target Start/End: Complemental strand, 45411952 - 45411778
Alignment:
| Q |
109 |
aaagacattaacaacacgagaagtagttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgctt |
208 |
Q |
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||||||| | ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45411952 |
aaagacacttacatcaagagaagtagttgatgaatgcaagactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgctt |
45411853 |
T |
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| Q |
209 |
cttgccacacatgaagattggcaaaatcaattaagagaagagattaaaggagttgtgggaaacaatgagtttgat |
283 |
Q |
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| T |
45411852 |
cttgctacacatgaagattggcaaaatcaattaagagaagagattaaagaagttgtgggaaacaatgagcttgat |
45411778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 29801219 - 29801104
Alignment:
| Q |
137 |
gatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagattggcaaaatc |
236 |
Q |
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||||| ||||| || || ||| ||||||| ||||| ||||||||| | ||||| | ||||||||| ||||| | || | ||| ||||||||||||||| |
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| T |
29801219 |
gatgagtgcaagacctttttcattggtggtcatgagacaacagcattggctatttcttggactttgatgcttttagctatgcataaagattggcaaaatc |
29801120 |
T |
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| Q |
237 |
aattaagagaagagat |
252 |
Q |
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| T |
29801119 |
aattgagagatgagat |
29801104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 64579 - 64449
Alignment:
| Q |
134 |
gttgatgaatgcaaaactttcttctttggtggacatgaaacaacagcacttgctatcacatggactttgttgcttcttgccacacatgaagattggcaaa |
233 |
Q |
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|||||||| ||||| || || |||||||||||| |||| || ||| ||||| | ||||||||||||||| ||||||| || |||||||||||||||| |
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| T |
64579 |
gttgatgagtgcaagacatttttctttggtggatatgagaccacatcactttcaatcacatggactttgctgcttctagctttgcatgaagattggcaaa |
64480 |
T |
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| Q |
234 |
atcaattaagagaagagattaaaggagttgt |
264 |
Q |
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| T |
64479 |
accaattgagagatgaaattaaagaagttgt |
64449 |
T |
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