View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7053_low_22 (Length: 270)
Name: NF7053_low_22
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 44014552 - 44014315
Alignment:
| Q |
17 |
agaaacaataatgaaaattcaaacagagattccaattcatcaagtttgtttaccaccagagagaacatcactcaacaaactcaaacacagactctctgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014552 |
agaaacaataatgaaaattcaaacagagattccaattcatcaagttcgtttaccaccagagagaacatcactcaacaaactcaaacacagactctctgaa |
44014453 |
T |
|
| Q |
117 |
atcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaagtttcttcttacccttcaattcttgttccccatttttcaatggg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014452 |
atcttcttccccgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaagtttcttcttacccttcaattcttgttccccatttttcaatggg |
44014353 |
T |
|
| Q |
217 |
gttctcagtatactctcacccttcttcgttctgatgtc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014352 |
gttctcagtatactctcacccttcttcgttctgatgtc |
44014315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 3172739 - 3172862
Alignment:
| Q |
105 |
agactctctgaaatcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaagtttcttcttacccttcaattcttgttcccca |
204 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| || | |||||||||||| | || || |||||||||||||| | ||||||| | |||| || | |
|
|
| T |
3172739 |
agactctctgaaatcttttttcctgatgacccttttcatggattcaaaaaccaaacttccttcacaaagtttcttctggctcttcaatacatgtttccga |
3172838 |
T |
|
| Q |
205 |
tttttcaatggggttctcagtata |
228 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
3172839 |
tttttcaatggggtcctcagtata |
3172862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University