View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_27 (Length: 241)
Name: NF7053_low_27
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1772520 - 1772312
Alignment:
| Q |
1 |
attccagctctattgaccccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgacacaaccacacgaaaaatcgaggttcc |
100 |
Q |
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| T |
1772520 |
attccagctctattgaccccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgacacaaccacacgaaaaatcgaggttcc |
1772421 |
T |
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| Q |
101 |
tagcaataaggtatgtgtattctcttaggcttggatgtgtagtattgagctcaatcatgttgcatgcttactgtcaatcttggactttgtgtacaatcaa |
200 |
Q |
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| T |
1772420 |
tagcaataaggtatgtgtattctcttaggcttggatgcgtagtattgagctcaatcatgttgcatgcctactgtcaatcttggac--tgtgtacaatcaa |
1772323 |
T |
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| Q |
201 |
actcgacaatg |
211 |
Q |
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||| ||||||| |
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| T |
1772322 |
actggacaatg |
1772312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 2525567 - 2525438
Alignment:
| Q |
1 |
attccagctctattgaccccaccttacagcatgatacttcttcaggacaaaagcaacctatatctgggtctgaca---caaccacacgaaaaatcgaggt |
97 |
Q |
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| T |
2525567 |
attccagctcaattgatcccacctttcagcatgatgcttcttttggacaaaagcaacctatatccgggtctgacacaacaaccacacaagaaattgaggt |
2525468 |
T |
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| Q |
98 |
tcctagcaataaggtatgtgtattctctta |
127 |
Q |
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| T |
2525467 |
tcctagcaataaggtatgtacattctctta |
2525438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2534349 - 2534486
Alignment:
| Q |
1 |
attccagctctattgaccccaccttacagcatgatacttcttcag---gacaaaagcaacctatatctgggtctgacacaa---ccacacgaaaaatcga |
94 |
Q |
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|||||||||||||||| |||||||| |||||| || ||||||| ||||||| ||||||||||| || |||||||||| |||||||| |||| || |
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| T |
2534349 |
attccagctctattgatcccacctttcagcattatgcttcttcttctagacaaaatcaacctatatccggctctgacacaacaaccacacgagaaattga |
2534448 |
T |
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| Q |
95 |
ggttcctagcaataaggtatgtgtattctcttaggctt |
132 |
Q |
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| T |
2534449 |
ggttcctagcaataaggtatatacattttcttaggctt |
2534486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 2525080 - 2524993
Alignment:
| Q |
124 |
cttaggcttggatgtgtagtattgagctcaatcatgttgcatgcttactgtcaatcttggactttgtgtacaatcaaactcgacaatg |
211 |
Q |
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||||||||||||| || ||||| |||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
2525080 |
cttaggcttggatacgtgttattgggctcaatcatgtcggattcttattgtcaatcttgggctttgtgtacaatcaaactcgacaatg |
2524993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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