View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_28 (Length: 241)
Name: NF7053_low_28
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_28 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 241
Target Start/End: Complemental strand, 46899430 - 46899199
Alignment:
| Q |
10 |
acatcatacatcagagaaaataaccttctacataatcatcatacaagaacacaaaaacagtagaattatatgataaagttaaaatcaaaaccattaatca |
109 |
Q |
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| T |
46899430 |
acatcatacatcagagaaaataaccttctacataatcatcatagaagaacacaaaaacagtagaattatatgataaagttaaaatcaaaaccattaatca |
46899331 |
T |
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| Q |
110 |
aaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctccccaaagggacagctccctgtatgc |
209 |
Q |
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| T |
46899330 |
aaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctccccaaagggacagctccctgtatgc |
46899231 |
T |
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| Q |
210 |
tgccattgacacagcttagtcttccaataagc |
241 |
Q |
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| T |
46899230 |
tgccattgacacagcttagtcttccaataagc |
46899199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 46864220 - 46864095
Alignment:
| Q |
89 |
taaaatcaaaaccattaatcaaaatagggagaatggaaattaacaaacagatgagttaacattacctgcttctccatgagcaaagtcacaggtctcccca |
188 |
Q |
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||||| ||| |||| ||||||||| ||||| || |||||| |||| | |||||||||| |||||||||||||||||||| ||||| |||| ||||||| |
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| T |
46864220 |
taaaaccaagaccaataatcaaaaaagggaaaagggaaatcaacacaaagatgagttattattacctgcttctccatgagaaaagtgacagtcctcccca |
46864121 |
T |
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| Q |
189 |
aagggacagctccctgtatgctgcca |
214 |
Q |
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| T |
46864120 |
aagggacagctcccttgatgctgcca |
46864095 |
T |
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