View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_3 (Length: 719)
Name: NF7053_low_3
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 701
Target Start/End: Complemental strand, 24895429 - 24894726
Alignment:
| Q |
1 |
atggatttaacgactgtaatgcttcctcaaaaaacaacactgacaaaacctctcaagggcctatcgcctatgtaatcaagtacattctagcccttacaca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24895429 |
atggatttaacgaatgtaatgcttcctcaaaaaacaacactgacaaaacctctcaagggcctatcgcctatgtaatcaagtacattctagcccttacaca |
24895330 |
T |
|
| Q |
101 |
tggtgttcagtcattaaaggtcatgtctcctcaatctcatccacgagatactagcaataaatgatgagaggacaaacgatcacatcttctacgaaggcat |
200 |
Q |
| |
|
||||||||| || |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24895329 |
tggtgttcaatccttaaaggtcatgtcccatcaatctcatccacgagatgctagcaataaatgatgagaggacaaacgatcacatcttctacgaaggcat |
24895230 |
T |
|
| Q |
201 |
caaatagtcacatccaatcacgaatataagannnnnnnacgagcataaggtaaaatcattaccgagcatcactcgtaaactaaaattttcactagatcta |
300 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
24895229 |
caaatagtcacatccaatcgcgaacataagatttttttacgagcacaaggtaaaatcattatcgagcatcactcgtaaactaaaattttcactagatcta |
24895130 |
T |
|
| Q |
301 |
caccagtagagtcctcctaatggaaacaaattggctccttgtgagcactctaaggaaacagttctccaacgagcatcgttaaccttagctcctcgcgagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24895129 |
caccagtagagtcctcctaatggaaacaaattggctccttgtgagcactctaaggaaacaattctccaacgagcatcgttaaccttagctcctcgcgagc |
24895030 |
T |
|
| Q |
401 |
ataattccatccgaatttacaagctctgtgcgagcgtgttatcaaaaacaagttccaagtca---aacatcaaattcataagctccttgcgagcacaatt |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
24895029 |
ataattccatccgaatttacaagctctgtgtgagcgtgttatcaaaaacaagttccaagtaattaaacatcaaattcataagctccttgcgagcacaatt |
24894930 |
T |
|
| Q |
498 |
ctttatacgcgcaaggttctttgcgaactgtttaaccacattgtctcctaaaacttgcagttttcacacaaattacaagtattaggcgagcaatacctat |
597 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24894929 |
ctttatacacgcaaggttctttgcgaactgtttaatcactttgtctcctaaaacatgcagttttcacacaaattacaagtattaggtgagcaatacctat |
24894830 |
T |
|
| Q |
598 |
ccttgcataggaattactcattgctcgaagtcatcactcatagtataagagcaacaacttgggggactactgttatggattgtccaaaagcctacgcttg |
697 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24894829 |
ccttgcataggaattactcattgctcgaagtcatcactcttagtataagagcaacaacctgggagactactgttatggattgtccaaaagcctacgcttg |
24894730 |
T |
|
| Q |
698 |
gact |
701 |
Q |
| |
|
|||| |
|
|
| T |
24894729 |
gact |
24894726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 17085970 - 17085928
Alignment:
| Q |
133 |
aatctcatccacgagatactagcaataaatgatgagaggacaa |
175 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
17085970 |
aatctcatctacgagatactcgcaataaatgctgagaggacaa |
17085928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 15339769 - 15339875
Alignment:
| Q |
116 |
aaaggtcatgtctcctcaatctcatccacgagatactagcaataaatgatgagaggacaaacgatcacatcttctacgaaggcatcaaatagtcacatcc |
215 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||| ||| ||| |||| | |||| | |||| || | ||| |||| || || | ||||||||||||||| |
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|
| T |
15339769 |
aaaggtcatgtcccctcaatctcatgcacaagatgctaacaacaaattctaagagaaaaaacaattatatcgtctatgatggtaccaaatagtcacatcc |
15339868 |
T |
|
| Q |
216 |
aatcacg |
222 |
Q |
| |
|
||||||| |
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|
| T |
15339869 |
aatcacg |
15339875 |
T |
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