View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_30 (Length: 227)
Name: NF7053_low_30
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 4285312 - 4285109
Alignment:
| Q |
9 |
gacatcatcacatacatcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
108 |
Q |
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| T |
4285312 |
gacatcatcacatacttcagaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttg |
4285213 |
T |
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| Q |
109 |
aatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttag |
199 |
Q |
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| T |
4285212 |
aatatttcacatgatcaagctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttag |
4285113 |
T |
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| Q |
200 |
atgg |
203 |
Q |
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|||| |
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| T |
4285112 |
atgg |
4285109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 4290023 - 4289832
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
127 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4290023 |
gaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4289924 |
T |
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| Q |
128 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaact |
210 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4289923 |
cttctgttttggctcttcaagttaccatttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaact |
4289832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 4260154 - 4260345
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
127 |
Q |
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||||||||||||| |||||||||||| |||| |||||||||||| ||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
4260154 |
gaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaag |
4260253 |
T |
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| Q |
128 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaact |
210 |
Q |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4260254 |
cttcttttttggctcttcaagttactttttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaact |
4260345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 4298607 - 4298416
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
127 |
Q |
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|||||| || ||| ||||||| || |||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4298607 |
gaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4298508 |
T |
|
| Q |
128 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaact |
210 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4298507 |
cttatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaact |
4298416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 4265700 - 4265891
Alignment:
| Q |
28 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
127 |
Q |
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|||||| |||||| |||||||||| | || | |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4265700 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4265799 |
T |
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| Q |
128 |
ctactgttttggctcttcaagttactgtttttccaaactatgga---------ggtattacttcacatcatgctgttttagatggtaaaact |
210 |
Q |
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|| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4265800 |
cttctattttggctcttcaagttactctttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaact |
4265891 |
T |
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