View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_31 (Length: 223)
Name: NF7053_low_31
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_31 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12416046 - 12416273
Alignment:
| Q |
1 |
gatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccata----tatatcatgacatgatctagtgcgttattaagac |
96 |
Q |
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| T |
12416046 |
gatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgttattaagac |
12416145 |
T |
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| Q |
97 |
acattaggcnnnnnnnn--tctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaagcaaactga |
194 |
Q |
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| T |
12416146 |
acattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaagcaaactg- |
12416244 |
T |
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| Q |
195 |
aaaaacggaaacaagatcaccattctacc |
223 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
12416245 |
aaaaccggaaacaagatcaccattctacc |
12416273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12428106 - 12428333
Alignment:
| Q |
1 |
gatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccata----tatatcatgacatgatctagtgcgttattaagac |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12428106 |
gatgttttacaaacaaaaaacagattttgacatgctggtgagtcacaaacaaatactccatagatatatatcatgacatgatctagtgcgttattaagac |
12428205 |
T |
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| Q |
97 |
acattaggcnnnnnnnn--tctgaaggatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaagcaaactga |
194 |
Q |
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| T |
12428206 |
acattaggcaaaacaaaaatctgaaagatttgcttgcaagaaattaagacaggattagtacatatggcaactaaaattgaacaaagcagaagcaaactg- |
12428304 |
T |
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| Q |
195 |
aaaaacggaaacaagatcaccattctacc |
223 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
12428305 |
aaaaccggaaacaagatcaccattctacc |
12428333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 12402231 - 12402298
Alignment:
| Q |
1 |
gatgttttacaaacaaaaaacagattttgacatg-----ctggtgagtcacaaacaaatactccatat |
63 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12402231 |
gatgttttacaaacaacaaacagattttgacatgctggtctggtgagtcacaaacaaatactccatat |
12402298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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