View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_32 (Length: 223)
Name: NF7053_low_32
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 20490543 - 20490747
Alignment:
| Q |
10 |
ggacatcatcgtaaccaacacaacaacaaacttgcaaaccgacgaaaacgacaacagaataggggagagacgttggatggaggataatcgaaggacaaag |
109 |
Q |
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| T |
20490543 |
ggacaacaccgtaaccaacacaacaacaaacttgcaaaccgacgaaaacgacaacggaagaggggagagacgttggatggaggataatcgaaggacaaag |
20490642 |
T |
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| Q |
110 |
gggagaacggtggtgcagtcatgaaagacattgcaccataacaacaagtgtctacatcgatgcggtagttttttggatgtgaaggggaggtgaggttggt |
209 |
Q |
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| T |
20490643 |
gggagaacggtggtgcagtcatgaaagacattgcaccataacagcaagcatctacatcgatgcggtagttttttggatgtgaagaggaggtgaggttggt |
20490742 |
T |
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| Q |
210 |
gatgt |
214 |
Q |
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||||| |
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| T |
20490743 |
gatgt |
20490747 |
T |
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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 42237249 - 42237357
Alignment:
| Q |
106 |
aaaggggagaacggtggtgcagtcatgaaagacattgcaccataacaacaagtgtctacatcgatgcggtagttttttggatgtgaaggggaggtgaggt |
205 |
Q |
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| T |
42237249 |
aaaggggagaacggtgatgctgccatgaaaggcatcgcaccaccacaacaagcatctacatctatgcggttgttgtttggatgtgaaggggaggagagga |
42237348 |
T |
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| Q |
206 |
tggtgatgt |
214 |
Q |
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| T |
42237349 |
cggtgatgt |
42237357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 32865260 - 32865368
Alignment:
| Q |
106 |
aaaggggagaacggtggtgcagtcatgaaagacattgcaccataacaacaagtgtctacatcgatgcggtagttttttggatgtgaaggggaggtgaggt |
205 |
Q |
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| T |
32865260 |
aaaggggagaacggtaatgcggccatgaaaggcatcgcaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagagga |
32865359 |
T |
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| Q |
206 |
tggtgatgt |
214 |
Q |
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|||||||| |
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| T |
32865360 |
cggtgatgt |
32865368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 214
Target Start/End: Complemental strand, 35246952 - 35246844
Alignment:
| Q |
106 |
aaaggggagaacggtggtgcagtcatgaaagacattgcaccataacaacaagtgtctacatcgatgcggtagttttttggatgtgaaggggaggtgaggt |
205 |
Q |
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|||||||||||| ||| ||| | |||||||| ||| ||||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||| |||| |
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| T |
35246952 |
aaaggggagaacagtgatgcggccatgaaaggcatcacaccaccacagcaagcatctacatcgatgcggttgttgtttggatgtgaaggggaggagagga |
35246853 |
T |
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| Q |
206 |
tggtgatgt |
214 |
Q |
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|||||||| |
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| T |
35246852 |
gggtgatgt |
35246844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 214
Target Start/End: Complemental strand, 21747343 - 21747258
Alignment:
| Q |
129 |
catgaaagacattgcaccataacaacaagtgtctacatcgatgcggtagttttttggatgtgaaggggaggtgaggttggtgatgt |
214 |
Q |
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|||||||| ||| |||||| ||| |||| |||||||||||| ||| ||| ||||||||||||||||||| |||| |||||||| |
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| T |
21747343 |
catgaaaggcatcgcaccaccacagcaagcatctacatcgatgtggttgttgtttggatgtgaaggggaggagaggacggtgatgt |
21747258 |
T |
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