View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_5 (Length: 669)
Name: NF7053_low_5
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 18 - 654
Target Start/End: Complemental strand, 44210570 - 44209934
Alignment:
| Q |
18 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
117 |
Q |
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| T |
44210570 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
44210471 |
T |
|
| Q |
118 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatagtaagatttctggaattttaaaatgccacag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44210470 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatggtaagatttctggaattttaaaatgccacag |
44210371 |
T |
|
| Q |
218 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210370 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttg |
44210271 |
T |
|
| Q |
318 |
tgatacacaaatgttaattttggattttgtagatgaattgacatgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210270 |
tgatacacaaatgttaattttggattttgtagatgaattgacatgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttat |
44210171 |
T |
|
| Q |
418 |
tgatgtgctgatgattgtgaataatgctgcacaaagtgttgaaatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210170 |
tgatgtgctgatgattgtgaataatgctgcacaaagtgttgaaatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatg |
44210071 |
T |
|
| Q |
518 |
ggtcaattgatgtcatacagtcttgacatgtattttggttcaaagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210070 |
ggtcaattgatgtcatacagtcttgacatgtattttggttcaaagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtt |
44209971 |
T |
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| Q |
618 |
tctgtctccgattgtttgactatcctccatttgatgt |
654 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44209970 |
tctgtctccgattgtttgactatcctccatttgatgt |
44209934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 44210593 - 44210553
Alignment:
| Q |
37 |
ctactgcatcaaccagcaacgcccatcataccaacccaagg |
77 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44210593 |
ctactgcatcaaccagcaacgtccatcataccaacccaagg |
44210553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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