View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7053_low_6 (Length: 625)
Name: NF7053_low_6
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 12 - 614
Target Start/End: Original strand, 3093763 - 3094365
Alignment:
| Q |
12 |
atggacatcagattgtcaacattgtcacgaatgtgagatcccatagtccgccttcatatatttctaagtataaatattgatgttatttttaatttgctca |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093763 |
atggtcatcagattgtcaacattgtcacgaatgtgagatcccatagtccgccttcatatatttctaagtataaatattgatgttatttttaatttgctca |
3093862 |
T |
|
| Q |
112 |
caaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatagagaggatggagagcctgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093863 |
caaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatagagaggatggagagcctgg |
3093962 |
T |
|
| Q |
212 |
accaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaaatgagaaccc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093963 |
accaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaaatgagaaccc |
3094062 |
T |
|
| Q |
312 |
tttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggcattttct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094063 |
tttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggcattttct |
3094162 |
T |
|
| Q |
412 |
ccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctt |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094163 |
ccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctt |
3094262 |
T |
|
| Q |
512 |
tggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgctgatgt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3094263 |
tggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgctggtgt |
3094362 |
T |
|
| Q |
612 |
cca |
614 |
Q |
| |
|
||| |
|
|
| T |
3094363 |
cca |
3094365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 94 - 603
Target Start/End: Original strand, 3084999 - 3085508
Alignment:
| Q |
94 |
ttatttttaatttgctcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatag |
193 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||| |
|
|
| T |
3084999 |
ttatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgattctacaagccatagcaaaagcaatag |
3085098 |
T |
|
| Q |
194 |
agaggatggagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacac |
293 |
Q |
| |
|
|||||| || ||||| ||||||||||| || ||||||||||||||||| || ||| | | || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3085099 |
ggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaaacac |
3085198 |
T |
|
| Q |
294 |
cgatccaaatgagaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataata |
393 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3085199 |
tgatccaaatgataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataata |
3085298 |
T |
|
| Q |
394 |
gattcaaaggcattttctccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacaca |
493 |
Q |
| |
|
|||||||| || ||| ||||||||| ||||| ||||| ||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||| |||| |
|
|
| T |
3085299 |
gattcaaatgcttttgctccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcaca |
3085398 |
T |
|
| Q |
494 |
caaatacttcaatgtctttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtga |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3085399 |
caaatacttcaatgtctttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatga |
3085498 |
T |
|
| Q |
594 |
ttataaggtt |
603 |
Q |
| |
|
|||||||||| |
|
|
| T |
3085499 |
ttataaggtt |
3085508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 42960094 - 42960045
Alignment:
| Q |
514 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
563 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
42960094 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
42960045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 585
Target Start/End: Original strand, 404890 - 404934
Alignment:
| Q |
541 |
actatatggcattatcatggtggttgtcaagttggtagggttgtt |
585 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
404890 |
actatatggcattatcatggtggatgtgttgttggtagggttgtt |
404934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University