View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7053_low_7 (Length: 485)
Name: NF7053_low_7
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 464
Target Start/End: Complemental strand, 23122644 - 23122199
Alignment:
| Q |
15 |
tggtgttcatgaaagtttgttggatggattattgtttatgtataaattatgttgtaaggatctcatattgtgatatcaaggctggttttaataatctggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23122644 |
tggtgttcatgaaagtttgttggatggattattgtttatgtataaattatgttgtaaggatctcatattgtgatatcaaggctggttttaataatctggt |
23122545 |
T |
|
| Q |
115 |
ctcgacttaattttttggatcctnnnnnnntattatgtaggctattttgtcgacacatacattcccttccctataaatttgagaaaatctaaatctaatg |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23122544 |
ctcgacttaattttttggatcctacaaaaatattacgtaggctattttgtcgacacatacattcccttccctataaatttgagaaaatctaaatctaatg |
23122445 |
T |
|
| Q |
215 |
tttttaataatattaagatagttttgccacttgtttttcaactttaaaggaacaagattaatattcgagaaagcagaaatacttaacaaggattcacatt |
314 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23122444 |
tttttcataatattaagatagttttgacactt-tttttcaactttaaaggaacaagattaatattcgagaaagcagaaatacttaacaaggattcacatt |
23122346 |
T |
|
| Q |
315 |
caagccataagtggtttgagacactagactgatcaattcaatgaaataagttacaacnnnnnnnncttttcaacatgaacataattagcaataccaatgt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23122345 |
caagccataagtggtttgagacactagactgatcaattcaatgaaataagttacaactttttt---ttttcaacatgaacataattagcaataccaatgt |
23122249 |
T |
|
| Q |
415 |
tagcagagaaagcactaataaaaattccaaggagactattaaaaatgcct |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23122248 |
tagcagagaaagcactaataaaaattccaaggagactaataaaaatgcct |
23122199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 23239862 - 23239932
Alignment:
| Q |
41 |
gattattgtttatgtataaattatgttgtaaggatctcatattgtgatatcaaggctggttttaataatct |
111 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| | ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
23239862 |
gattattggttatgtttaaactatgttgtaaggatttgatattgtgacatcaaggatggttttaataatct |
23239932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 23235192 - 23235264
Alignment:
| Q |
39 |
tggattattgtttatgtataaattatgttgtaaggatctcatattgtgatatcaaggctggttttaataatct |
111 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
23235192 |
tggattataatttatgtataagttatgttctaaggatctgatattgtgacgtcagggctggttttaataatct |
23235264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University