View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7053_low_8 (Length: 451)

Name: NF7053_low_8
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7053_low_8
NF7053_low_8
[»] chr5 (16 HSPs)
chr5 (15-451)||(43312386-43312822)
chr5 (107-232)||(39486411-39486536)
chr5 (108-211)||(39454592-39454695)
chr5 (105-229)||(39480323-39480447)
chr5 (107-217)||(39450952-39451062)
chr5 (105-239)||(39458379-39458513)
chr5 (108-232)||(39464626-39464750)
chr5 (107-217)||(39475458-39475568)
chr5 (107-211)||(39471988-39472092)
chr5 (411-451)||(39475789-39475829)
chr5 (417-451)||(39483546-39483580)
chr5 (417-451)||(39486754-39486788)
chr5 (421-451)||(39451293-39451323)
chr5 (414-451)||(39458146-39458183)
chr5 (418-451)||(39464407-39464440)
chr5 (107-211)||(39460202-39460306)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Complemental strand, 43312822 - 43312386
Alignment:
Q  15 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaaga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  43312822 gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaaga 43312723  T
Q  115 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  43312722 aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgt 43312623  T
Q  215 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43312622 aaccgtcttggtcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcat 43312523  T
Q  315 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312522 gttccctccacctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcg 43312423  T
Q  415 ctgccttcgttgttgacatgttctgcaccaccatgat 451  Q
    |||||||||||||||||||||||||||||||||||||    
T  43312422 ctgccttcgttgttgacatgttctgcaccaccatgat 43312386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 232
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
Q  107 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 206  Q
    ||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| ||||| ||||||||  |||||||||||||||||    
T  39486411 gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt 39486510  T
Q  207 ctccgtgtaaccgtcttggtcatcaa 232  Q
    |||||  ||||| |||||||||||||    
T  39486511 ctccgaataaccatcttggtcatcaa 39486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
Q  108 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 207  Q
    |||||||||  |||||||||||||||||||||||| ||||| || |||||||| |||||||||||||| || || |||||  ||||||||||||||||||    
T  39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
Q  208 tccg 211  Q
    ||||    
T  39454692 tccg 39454695  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
Q  105 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 204  Q
    ||||||||||||  |||||||||| |||||||||| || ||||| || ||| |||| ||||||||||| || || ||||||||  |||||||||||||||    
T  39480323 aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc 39480422  T
Q  205 gtctccgtgtaaccgtcttggtcat 229  Q
    |||||||  |||| || ||||||||    
T  39480423 gtctccgaataactgttttggtcat 39480447  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
Q  107 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 206  Q
    ||||||||||  |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || ||||||||  |||| ||||||||||||    
T  39450952 gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt 39451051  T
Q  207 ctccgtgtaac 217  Q
    ||||| |||||    
T  39451052 ctccgagtaac 39451062  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 105 - 239
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
Q  105 aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc 204  Q
    ||||||||||||  |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| ||||||||  |||||||||||||||    
T  39458513 aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc 39458414  T
Q  205 gtctccgtgtaaccgtcttggtcatcaagtttcca 239  Q
    |||||||  ||||  |||||||||| || ||||||    
T  39458413 gtctccgaataactatcttggtcatgaaatttcca 39458379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 108 - 232
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
Q  108 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc 207  Q
    |||||||||  |||||| ||||||||||||| ||| | ||| || ||| |||| ||  ||||||||||||| ||||||||  ||||||||||||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
Q  208 tccgtgtaaccgtcttggtcatcaa 232  Q
    ||||  ||||| |||| ||||||||    
T  39464650 tccgaataaccatcttagtcatcaa 39464626  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
Q  107 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 206  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  ||||||||  |||| ||||||||||||    
T  39475458 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 39475557  T
Q  207 ctccgtgtaac 217  Q
    ||||| |||||    
T  39475558 ctccgagtaac 39475568  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
Q  107 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 206  Q
    ||||||||||  ||||||||||||| |||||| ||| | || ||| ||| |||| ||  | || |||||||| ||||||||  |||||||||||||||||    
T  39471988 gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt 39472087  T
Q  207 ctccg 211  Q
    |||||    
T  39472088 ctccg 39472092  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 39475789 - 39475829
Alignment:
Q  411 ctcgctgccttcgttgttgacatgttctgcaccaccatgat 451  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39475789 ctcgccgccttcgttgttgacatgttctgcaccaccatgat 39475829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 39483546 - 39483580
Alignment:
Q  417 gccttcgttgttgacatgttctgcaccaccatgat 451  Q
    |||||||||||||||||||||||||||||||||||    
T  39483546 gccttcgttgttgacatgttctgcaccaccatgat 39483580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 39486754 - 39486788
Alignment:
Q  417 gccttcgttgttgacatgttctgcaccaccatgat 451  Q
    |||||||||||||||||||||||||||||||||||    
T  39486754 gccttcgttgttgacatgttctgcaccaccatgat 39486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 39451293 - 39451323
Alignment:
Q  421 tcgttgttgacatgttctgcaccaccatgat 451  Q
    |||||||||||||||||||||||||||||||    
T  39451293 tcgttgttgacatgttctgcaccaccatgat 39451323  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 451
Target Start/End: Complemental strand, 39458183 - 39458146
Alignment:
Q  414 gctgccttcgttgttgacatgttctgcaccaccatgat 451  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  39458183 gctgcattcattgttgacatgttctgcaccaccatgat 39458146  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 39464440 - 39464407
Alignment:
Q  418 ccttcgttgttgacatgttctgcaccaccatgat 451  Q
    ||||||||||||||||||||||||||| ||||||    
T  39464440 ccttcgttgttgacatgttctgcaccaacatgat 39464407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 39460202 - 39460306
Alignment:
Q  107 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt 206  Q
    ||||||||||  |||||| ||||||||||||| ||| |||  | | ||| |||  |||||||||||||| || ||||||||   |||||||||||| ||     
T  39460202 gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgc 39460301  T
Q  207 ctccg 211  Q
    |||||    
T  39460302 ctccg 39460306  T

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