View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7053_low_9 (Length: 422)
Name: NF7053_low_9
Description: NF7053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7053_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 38809269 - 38809068
Alignment:
| Q |
14 |
atcaagaggttttaccaaatgctaatttaatcattatttatagta-tctaagagaaatttggatatagaaaaataaccatttgtcctaccggtgccactt |
112 |
Q |
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| T |
38809269 |
atcaagaggttttaccaaatgctaatttaatcattatttatagtaatctaagagaaatttggatatagaaaaataaccatttgtcctaccggtgccactt |
38809170 |
T |
|
| Q |
113 |
gtttgtctaaactaatggtcaatataggagtatata--tatagtacatcacgttgttaatagtatcttaacctagtgaggtgaaacattgaacctcaaca |
210 |
Q |
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| T |
38809169 |
gtttgtctaaactaatggtcaatataggagtatatatatatagtacatcacgttgttaatagtatcttaacctagtgaggtgaaacattgaacctcaaca |
38809070 |
T |
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| Q |
211 |
gc |
212 |
Q |
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|| |
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| T |
38809069 |
gc |
38809068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 38822250 - 38822186
Alignment:
| Q |
69 |
atttggatatagaaaaat-aaccatttgtcctaccggtgccacttgtttgtctaaactaatggtc |
132 |
Q |
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| T |
38822250 |
atttggatatagaaaaaagaattatttgtcctaccagtgccacttgtttgtctaaactgatggtc |
38822186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 6837252 - 6837150
Alignment:
| Q |
298 |
aacattcacgaaattccacaaatattccttttatcataataaactggagactcttcttcctgagcttcagtctcacctaccaccatttgatccaccatta |
397 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6837252 |
aacattcacgaaattccacgaatattccttttatcataataaactagagactcttcttcctgagcttcagtctcacctaccaccatttgatccaccatta |
6837153 |
T |
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| Q |
398 |
tca |
400 |
Q |
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||| |
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| T |
6837152 |
tca |
6837150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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