View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7054_high_2 (Length: 348)
Name: NF7054_high_2
Description: NF7054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7054_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 35438727 - 35438405
Alignment:
| Q |
9 |
ggacatcatagtgaagaactaataggtattttgcaccacaagtctcatgaaaaagattgataaattttttgttgctttagttggaagcaaaaatcccaaa |
108 |
Q |
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| T |
35438727 |
ggacatcatagtgaagaactaataggtattttgcaccacaagtctcatgaaaaagattgataaaatttttgttgctttagttggaaacaaaa-tcccaaa |
35438629 |
T |
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| Q |
109 |
aacatgcctttagattttattcaaaaccttggaatttttatggaattgcttcttctaacataatcatgttatatggaaatcaactttgttgaatccacaa |
208 |
Q |
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| T |
35438628 |
aacatgcctttagattttattcaaaaccttggaatttttatggaattgcttcttctaacataatcatgttatatggaaatcaactttgttgaatccacaa |
35438529 |
T |
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| Q |
209 |
ctatcaagtaccaaactatacatagcattagaatgaatctattaatctctaaaaacaaataaaccaaagttaaaagaaaacaggataaatttgcagtgga |
308 |
Q |
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| T |
35438528 |
ctatcaagtaccaaactatacatagcattagaatgaatctattaatctctaaaaacaaataaaccaaagttaaaagaaaacaggataaatttgcagtgga |
35438429 |
T |
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| Q |
309 |
aagggaaagcaagaaccatatgat |
332 |
Q |
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|| ||||||||||||||||||||| |
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| T |
35438428 |
aatggaaagcaagaaccatatgat |
35438405 |
T |
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