View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7054_low_1 (Length: 381)
Name: NF7054_low_1
Description: NF7054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7054_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 28314527 - 28314881
Alignment:
| Q |
17 |
agaatcgtaccgtagattttcagctagatatgcagcaccttcatgttcaattaaatctctcaagtaaatatgattaaggtatggacgtaggtg--atagt |
114 |
Q |
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| T |
28314527 |
agaatcgtgccgtagattttcagctagatatgcagcaccttcatgttcaattaaatctctcaagtaaatatgattaaggtatggacgtaggtgtgatagt |
28314626 |
T |
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| Q |
115 |
accatttcatgagaggagattgtataattacaattaagtgaattatcaaaataaaatatttaagtaatatgcaattttgatctttattcttgtatattgg |
214 |
Q |
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| T |
28314627 |
accatttcatgagacgagattgtataattacaattaagtgaattatcaaaataaaatatttaagtaatatgcaattttgatctttattcttgtatattgg |
28314726 |
T |
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| Q |
215 |
taactgtatttcgaactatataaatttgtgttggtttaatttgttgatcaacacatgcacaaggttttaaattttaaataaactggttgaccgtaatcgt |
314 |
Q |
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| T |
28314727 |
taa-tgtatttcgaactatataaatttgtgttggtttaatttgttgatcaacacatgcacaaggttttaaattttaaataaactggctgaccgtaatcgt |
28314825 |
T |
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| Q |
315 |
agctatcatgaaggtttttgtctttgattcctatcaatatattcatttctgatgtc |
370 |
Q |
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| T |
28314826 |
agctatcatgaaggtttttgtctttgattcctatctatatattcatttcttatgtc |
28314881 |
T |
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