View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7054_low_3 (Length: 261)
Name: NF7054_low_3
Description: NF7054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7054_low_3 |
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| [»] scaffold0289 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 914093 - 914313
Alignment:
| Q |
16 |
ttaggcacatatatttaatctccttgtttcttcaaattttcaaccaatagaacctgatcaaccattatctggaccttgatataatttacgcccttttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
914093 |
ttaggcacatatatttaatctccttgtttcttcaaattttcaaccaatagaacctgatcaaccattatctggaccttgatataatttacgcccttttgtt |
914192 |
T |
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| Q |
116 |
cccttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataacgtggctcattgcaataaaatagatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
914193 |
cccttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataacgtggctcattgcaataaaatagatat |
914292 |
T |
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| Q |
216 |
aatagagtggttcattacaat |
236 |
Q |
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|||||||||| |||||||||| |
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| T |
914293 |
aatagagtggctcattacaat |
914313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 890199 - 890134
Alignment:
| Q |
22 |
acatatatttaatctccttgtttcttcaaattttcaaccaatagaacctgatcaaccattatctgg |
87 |
Q |
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| T |
890199 |
acatatatttaatctccttgttacttcaaattttgaaccaataaaacctgatcaaccattatctgg |
890134 |
T |
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Target: scaffold0289 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 21718 - 21843
Alignment:
| Q |
94 |
atataatttacgcccttttgttcccttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataac---g |
190 |
Q |
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||||||||||||||||||| |||| |||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||||||||||||| | |
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| T |
21718 |
atataatttacgcccttttattcc----attcgaatgcatataggcataatcataacaaaaaattacataattctcattaatataatagatataacagag |
21813 |
T |
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| Q |
191 |
tggctcattgcaataaaatagatataatag |
220 |
Q |
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| T |
21814 |
tggctgattgcaataaaataaatataatag |
21843 |
T |
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Target: scaffold0018 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 66835 - 66977
Alignment:
| Q |
94 |
atataatttacgcccttttgttcccttaattcgaatgcatgtaggcataatcatgaccaaaa-attacacaattctcattaatataatagatataa---c |
189 |
Q |
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|||||||||||||||||||||| | |||||||||||| ||||||||||||| | |||| |||||||||| ||| |||||||||||||||||| |
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| T |
66835 |
atataatttacgcccttttgtttc----attcgaatgcatataggcataatcatagcaaaaaaattacacaatcctcgttaatataatagatataataga |
66930 |
T |
|
| Q |
190 |
gtggctcattgcaataaaatagatataatagagtggttcattacaat |
236 |
Q |
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||| ||||||||||||||||| ||||||| ||||| ||||| |||| |
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| T |
66931 |
gtgactcattgcaataaaatatctataataaagtggctcattgcaat |
66977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 9270335 - 9270457
Alignment:
| Q |
94 |
atataatttacgcccttttgttcccttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataac---g |
190 |
Q |
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|
|||||||||| |||||||| |||| |||||||||||| ||||||||| || || |||||||||| ||| ||||||||||||||||||||||| | |
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| T |
9270335 |
atataatttatgcccttttattcc----attcgaatgcatacaggcataattataacaaaaaattacataatcctcattaatataatagatataacagag |
9270430 |
T |
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| Q |
191 |
tggctcattgcaataaaatagatataa |
217 |
Q |
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||||| |||||||||||||| |||||| |
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| T |
9270431 |
tggctgattgcaataaaataaatataa |
9270457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 6440454 - 6440551
Alignment:
| Q |
122 |
attcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataac---gtggctcattgcaataaaatagatata |
216 |
Q |
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|||||||||||| ||||||||||||| || ||||||||| ||| |||||||||||||| |||||||| |||| | |||||||||||||| ||||| |
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| T |
6440454 |
attcgaatgcatataggcataatcataacaaaaaattacttaatcctcattaatataattgatataacagagtggttgattgcaataaaataaatata |
6440551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 46514889 - 46514799
Alignment:
| Q |
94 |
atataatttacgcccttttgttcccttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataa |
188 |
Q |
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|
||||||||||||||||||| |||| |||||||||||| ||||||||||||| || |||||||||| || |||||||||||||||||||||| |
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| T |
46514889 |
atataatttacgcccttttattcc----attcgaatgcatataggcataatcataacaaaaaattacataaccctcattaatataatagatataa |
46514799 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 15273267 - 15273197
Alignment:
| Q |
119 |
ttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataac |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||| || |||||||||| || ||||||||||||||||||||||| |
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| T |
15273267 |
ttaattcgaatgcatataggcataatcataacaaaaaattacatgatcctcattaatataatagatataac |
15273197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 15453636 - 15453566
Alignment:
| Q |
119 |
ttaattcgaatgcatgtaggcataatcatgaccaaaaattacacaattctcattaatataatagatataac |
189 |
Q |
| |
|
||||||||||||||| ||||||||||||| || |||||||||| || ||||||||||||||||||||||| |
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| T |
15453636 |
ttaattcgaatgcatataggcataatcataacaaaaaattacatgatcctcattaatataatagatataac |
15453566 |
T |
|
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 14287732 - 14287818
Alignment:
| Q |
94 |
atataatttacgcccttttgttcccttaattcgaatgcatgtaggcataatcatgaccaaaaa-ttacacaattctcattaatataataga |
183 |
Q |
| |
|
|||||||||||||| |||| |||| |||||||||||| ||||||||||||| || ||||| ||||| ||| ||||||||||||||||| |
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| T |
14287732 |
atataatttacgccattttattcc----attcgaatgcatataggcataatcataacaaaaaaattacataatcctcattaatataataga |
14287818 |
T |
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