View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_high_2 (Length: 486)
Name: NF7055_high_2
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 23 - 474
Target Start/End: Original strand, 8467451 - 8467902
Alignment:
| Q |
23 |
ctcttcttattcacaaccttcttcttaccaccaaccgttccatttgtcttcctcttctggttttgttgcttcttctccgcaacggagtcttttttctcct |
122 |
Q |
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| T |
8467451 |
ctcttcttattcacaaccttcttcttaccaccaaccgttgcatttgtcttcctcttctggttttgttgcttcttctccgcaacagagtcttttttctcct |
8467550 |
T |
|
| Q |
123 |
tcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagcttccctctcttggtttgattcttaagctgcaagcttagtatcttctt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467551 |
tcttcggcttctcggcatcagatagtttatacgaagctttgatcttcaccagcttccctctcttggtttgattcttaagctgcaagcttagtatcttctt |
8467650 |
T |
|
| Q |
223 |
gaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatagcgtaagggcttgagccattcctctcctttagagccagtaaagcctcc |
322 |
Q |
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| T |
8467651 |
gaaatttgctgggagcaccggcttgaacttctcgtccatgtatttcgctatagcgtaagggcttgagccattcctctcctttagagccagtaaagcctcc |
8467750 |
T |
|
| Q |
323 |
ttaaccatctacaaaaataaataagtatacgcttaaatcaaccagtagtttgaaactatattgaaagtttgaaacaattacctcaaaatatggaggatga |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467751 |
ttaaccatctacaaaaataaataagtatacgcttaaatcaaccagaagtttgaaactatattgaaagtttgaaacaattacctcaaaatatggaggatga |
8467850 |
T |
|
| Q |
423 |
gaagctgttttggtttgtttggaagcttttggtttcatttccttcacaggtt |
474 |
Q |
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| T |
8467851 |
gaagctgttttggtttgtttggaagcttttggtttcatttccttcacaggtt |
8467902 |
T |
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