View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7055_high_4 (Length: 434)

Name: NF7055_high_4
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7055_high_4
NF7055_high_4
[»] chr3 (3 HSPs)
chr3 (294-423)||(12404829-12404958)
chr3 (18-132)||(12404483-12404597)
chr3 (180-255)||(12404685-12404760)
[»] chr7 (2 HSPs)
chr7 (170-240)||(18037851-18037921)
chr7 (227-255)||(24937858-24937886)
[»] chr1 (1 HSPs)
chr1 (168-260)||(13643596-13643688)
[»] chr5 (2 HSPs)
chr5 (370-429)||(38727930-38727989)
chr5 (227-255)||(14152530-14152558)
[»] chr8 (2 HSPs)
chr8 (168-210)||(34085205-34085247)
chr8 (168-249)||(3137433-3137514)
[»] chr6 (4 HSPs)
chr6 (222-255)||(9213095-9213128)
chr6 (189-250)||(10008225-10008286)
chr6 (168-233)||(33607750-33607815)
chr6 (227-255)||(28048799-28048827)
[»] chr4 (1 HSPs)
chr4 (227-255)||(37461824-37461852)
[»] chr2 (1 HSPs)
chr2 (176-256)||(33635539-33635619)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 294 - 423
Target Start/End: Original strand, 12404829 - 12404958
Alignment:
Q  294 tgtagatattgattaattgattgcttgttataggtatccatcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 393  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404829 tgtagatattggttaattgattgcttgttataggtatccttcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 12404928  T
Q  394 cctgttgatatctctccacatgatcttcat 423  Q
    ||||||||||||||||||||||||||||||    
T  12404929 cctgttgatatctctccacatgatcttcat 12404958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 12404483 - 12404597
Alignment:
Q  18 accaatacctttctagcaaggtaaattttttatgattttcgataatcacatgcttaattgggccatctcatggaatcaattatgtattaaattggttcac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||||    
T  12404483 accaatacctttctagcaaggtaaattttttatgattttcgataatcacatgcttaagtgtgtcatctcatggaatctattatgtattaaattggttcac 12404582  T
Q  118 attggttatatattt 132  Q
    |||||||||||||||    
T  12404583 attggttatatattt 12404597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 12404685 - 12404760
Alignment:
Q  180 cataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaa 255  Q
    ||||||||||  |||||| |||||||||||||| | ||||| ||| |||||||  ||||||| |||||||||||||    
T  12404685 cataaataaactttttgtcttgaaagtataaattggttcttttgagcaagtaacgattacactactttttataaaa 12404760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 18037851 - 18037921
Alignment:
Q  170 ttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattaca 240  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| | | ||| ||||||| |||||||||||    
T  18037851 ttaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaaataataattaca 18037921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 24937886 - 24937858
Alignment:
Q  227 aagtaataattacaccactttttataaaa 255  Q
    |||||||||||||||||||||||||||||    
T  24937886 aagtaataattacaccactttttataaaa 24937858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 13643688 - 13643596
Alignment:
Q  168 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaatttta 260  Q
    ||||||| ||||||||| ||||||  |||| |||||| |||||| || | ||| |||  || |||| |||||||||||||| |||||||||||    
T  13643688 ggttaaggaattcataagtaaaaaaattgtcttgaaaatataaaccgttacttttgacaaattaattattacaccacttttaataaaatttta 13643596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 38727989 - 38727930
Alignment:
Q  370 ccatgggaaaggataagagcacctcctgttgatatctctccacatgatcttcatctcact 429  Q
    |||||||||||| |||||||||| ||||| ||||   ||||||||||||||||| |||||    
T  38727989 ccatgggaaaggctaagagcaccgcctgtcgatacgcctccacatgatcttcatatcact 38727930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 14152530 - 14152558
Alignment:
Q  227 aagtaataattacaccactttttataaaa 255  Q
    |||||||||||||||||||||||||||||    
T  14152530 aagtaataattacaccactttttataaaa 14152558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 34085205 - 34085247
Alignment:
Q  168 ggttaagaaattcataaataaaaattttgtgttgaaagtataa 210  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  34085205 ggttaagaaattcataaataaaaaatttgttttgaaaatataa 34085247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 3137514 - 3137433
Alignment:
Q  168 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttt 249  Q
    |||||||||||||| ||||| ||||||||| |||||| | |||   | | ||| |||||||||||| ||||||| |||||||    
T  3137514 ggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaacttttt 3137433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 9213095 - 9213128
Alignment:
Q  222 tgatcaagtaataattacaccactttttataaaa 255  Q
    |||||||||||||||||||| |||||||||||||    
T  9213095 tgatcaagtaataattacactactttttataaaa 9213128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 10008286 - 10008225
Alignment:
Q  189 aaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttta 250  Q
    ||||||||| || ||| ||||||  | | ||| |||||||||||||||||||||||||||||    
T  10008286 aaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccacttttta 10008225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 33607750 - 33607815
Alignment:
Q  168 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaat 233  Q
    |||||||||||||||||||||||||| |||  | ||| ||||||  | | ||||||||||||||||    
T  33607750 ggttaagaaattcataaataaaaattatgtcattaaaatataaagtgttacttctgatcaagtaat 33607815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 28048799 - 28048827
Alignment:
Q  227 aagtaataattacaccactttttataaaa 255  Q
    |||||||||||||||||||||||||||||    
T  28048799 aagtaataattacaccactttttataaaa 28048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 37461824 - 37461852
Alignment:
Q  227 aagtaataattacaccactttttataaaa 255  Q
    |||||||||||||||||||||||||||||    
T  37461824 aagtaataattacaccactttttataaaa 37461852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 33635619 - 33635539
Alignment:
Q  176 aattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaat 256  Q
    |||| |||||| |||| ||||| |||||| |||||||     ||| |||| |||||||||||||| |||||||||||||||    
T  33635619 aatttataaatgaaaaatttgtcttgaaaatataaattttgacttttgattaagtaataattacatcactttttataaaat 33635539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University