View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_high_9 (Length: 312)
Name: NF7055_high_9
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_high_9 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 3822371 - 3822664
Alignment:
| Q |
3 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
102 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822371 |
aactttttcactccaatacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
3822470 |
T |
|
| Q |
103 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822471 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
3822570 |
T |
|
| Q |
203 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcatcgttgttatatgttct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3822571 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcattgttgttatatgttct |
3822664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 3826525 - 3826232
Alignment:
| Q |
3 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826525 |
aactttttcactccaaaacttaaatatcatgttgaatgtgtttccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
3826426 |
T |
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| Q |
103 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826425 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
3826326 |
T |
|
| Q |
203 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcatcgttgttatatgttct |
296 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3826325 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcattgttgttatatgttct |
3826232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 3784644 - 3784937
Alignment:
| Q |
3 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3784644 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
3784743 |
T |
|
| Q |
103 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
202 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3784744 |
ttcaacaagggcaagaaatacgtttccacatgattcttgttcaatagtaatctaccctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
3784843 |
T |
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| Q |
203 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcatcgttgttatatgttct |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3784844 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcattgttgttatatgttct |
3784937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 3788812 - 3788519
Alignment:
| Q |
3 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3788812 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
3788713 |
T |
|
| Q |
103 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
202 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3788712 |
ttcaacaagggcaagaaatatgtttccacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
3788613 |
T |
|
| Q |
203 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcatcgttgttatatgttct |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3788612 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcattgttgttatatgttct |
3788519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 3 - 296
Target Start/End: Complemental strand, 2362 - 2069
Alignment:
| Q |
3 |
aactttttcactccaaaacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
102 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2362 |
aactttttcactccaatacttaaatatcatgttgaatgtgttgccttgcatgtcataaacaacgacgtctattccttctcgaacatcttcttctcctttt |
2263 |
T |
|
| Q |
103 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
202 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2262 |
ttcaacaagggcaagaaatacgttttcacatgattcttgttcaatagtaatctactctgacccggttccaaatcagtagggtatagtttcttcacaaaag |
2163 |
T |
|
| Q |
203 |
gcttgcaacaaaaaagaatatcattgtttgttacaccaggaatcgtcggtatattgatttgtggcgctggatgagcatcgttgttatatgttct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2162 |
gcttgcaacaaaaaagaatatcattgtttgttataccaggaatcgtcggtatattgatttgtggcgctggatgagcattgttgttatatgttct |
2069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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