View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_11 (Length: 336)
Name: NF7055_low_11
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 42842916 - 42842608
Alignment:
| Q |
14 |
atcattttcaggttcagaatcccatgatgataaaggtgattcagaaccctgcttcatagaagccactgaggtattatcaccatcaaagctaacattgaga |
113 |
Q |
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| T |
42842916 |
atcattttcaggttcagaatcccatgatgataaaggtgattcagaaccctgcttcatagaagccactgaggtattatcaccatcaaagctaacattgaga |
42842817 |
T |
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| Q |
114 |
ggttggagcttagacttcagcatcatcagattttgatacggagtcatcgatacactctctccgccacaacttacatcaaaattgccagagtcctccatca |
213 |
Q |
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| T |
42842816 |
ggttggagcttagacttcagcatcatcagattttgatacagagtcatcgatacactctctccgccacaacttacatcaaaattgccagagtcctccatca |
42842717 |
T |
|
| Q |
214 |
gagattctgagaataaactcaatgattagaactctacaatgtataaaagtatgcacaagtatacaaataatgtttaaaacatgcctaaattttttacaac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42842716 |
gagattctgagaataaactcaatgattagaactctacaatgaataaaagtatgcacaagtatacaaataatgtttaaaacatgcctaaaaaatttacaac |
42842617 |
T |
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| Q |
314 |
gtttgatgt |
322 |
Q |
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| T |
42842616 |
gtttgatgt |
42842608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 7364074 - 7364369
Alignment:
| Q |
46 |
aaggtgattcagaaccctgcttcatagaagccactgaggtattatcaccatcaaagctaa------------cattgagaggttggagctta--gacttc |
131 |
Q |
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| T |
7364074 |
aaggtgattcagaaccctccttcatagaaggcacaaatgtattatcaccatcaaagctaagagttaagtcaacattgagaggttggagcttatagacttc |
7364173 |
T |
|
| Q |
132 |
agcatcatcagattttgatacggagtcatcgatacactctctccgccacaacttacatcaaaattgccagagtcctccatcagagattctgagaataaac |
231 |
Q |
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| T |
7364174 |
agcaacatcagattttgatacagagtcatcgatacactctctccgccacaacttacatcaaaattgctagagtcctccatcagagattctgaaaataaat |
7364273 |
T |
|
| Q |
232 |
tc-----aatgattagaactctacaatgtataaaagtatgcacaagtatacaaataatgtttaaaacatgcctaaattttttacaacgtttgatgt |
322 |
Q |
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| T |
7364274 |
tcaatataatgattagaactctacaatgaaaagaagtttccacaagtatacaaataatgttgaaatcatgccaacaaaatttacaacgtttgatgt |
7364369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 12627570 - 12627480
Alignment:
| Q |
14 |
atcattttcaggttcagaatcccatgatgataaaggtgattcagaaccctgcttcatagaagccactgaggtattatcaccatcaaagcta |
104 |
Q |
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| T |
12627570 |
atcagtttcagcttcggaatcccatgacgataattgtgattcataaccctctttcagagaagccacagagatgttatcactatcatagcta |
12627480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12621683 - 12621634
Alignment:
| Q |
14 |
atcattttcaggttcagaatcccatgatgataaaggtgattcagaaccct |
63 |
Q |
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|||| |||||||||||||||||||||| || |||||||||| | |||||| |
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| T |
12621683 |
atcagtttcaggttcagaatcccatgacgacaaaggtgattgacaaccct |
12621634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 12627394 - 12627345
Alignment:
| Q |
205 |
cctccatcagagattctgagaataaactcaatgattagaactctacaatg |
254 |
Q |
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|||||||| |||||||||||| | ||||| ||||| |||||||||||||| |
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| T |
12627394 |
cctccatcggagattctgagagtgaactctatgataagaactctacaatg |
12627345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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