View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7055_low_15 (Length: 266)
Name: NF7055_low_15
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 8183936 - 8183701
Alignment:
| Q |
13 |
aatatcacaagaaaggtataaatttaactttagatatatgaatgaattgaaacaatgtattgaaaagttaccacagtttttagcttagcaccagctccaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8183936 |
aatatcacaagaaaggtataaatttaactttagatatatgaatgaattgaaacaatgtattgaaaagttaccacagtttttagcttagcaccagctccaa |
8183837 |
T |
|
| Q |
113 |
agcttgtttttccaggtggaatagggagaaccttaggatcactaatagcatcagatatcggatcagttgggatttcatcaccagactcgcgcagaatagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8183836 |
agcttgtttttccaggtggaatagggagaaccttaggatcactaatagcatcagatatcggatcagttgggatttcatcaccagactcgcgcagaatagc |
8183737 |
T |
|
| Q |
213 |
attgaacatagccacatctaatcttgccacacattg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8183736 |
attgaacatagccacatctaatcttgccacacattg |
8183701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 33582190 - 33582317
Alignment:
| Q |
103 |
ccagctccaaagcttgtttttccaggtggaatagggagaaccttaggatcactaatagcatcagatatcggatcagttgggatttcatcaccagactcgc |
202 |
Q |
| |
|
||||| ||||||| || |||||||| ||||||||| |||||||||| ||||||||||| |||||||| ||||| || || || ||||| | || || | |
|
|
| T |
33582190 |
ccagccccaaagcctgattttccagatggaataggaagaaccttagaatcactaatagggtcagatataggatccgtgggcatctcatcggctgattccc |
33582289 |
T |
|
| Q |
203 |
gcagaatagcattgaacatagccacatc |
230 |
Q |
| |
|
| ||||||||||||||||| |||||||| |
|
|
| T |
33582290 |
gaagaatagcattgaacatcgccacatc |
33582317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University