View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_17 (Length: 246)
Name: NF7055_low_17
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 48475637 - 48475421
Alignment:
| Q |
18 |
atttgttgtattggtatattcttgatttggattgaagggagctaaattatctaaaataccactcttttgaacatgtcttgctcacaccgtaaatatatac |
117 |
Q |
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| T |
48475637 |
atttgttgcattggtatattcttgatttggattgaagggagctaaattatctaaaataccactcttttgaacatgtcttgctcacaccgtaaatatatac |
48475538 |
T |
|
| Q |
118 |
aaacagaataaattgtcatattaacaatcaaaatagctaatactttttatttaaacaatcaaaattgaagctttattgagtttgatgttgtgtgattttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48475537 |
aaacagaataaattgtcatattaacaatcaaaatagctaatactttttattcaaacaatcaaaattgaagctttattgagtttgatgttgtgtgattttg |
48475438 |
T |
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| Q |
218 |
gttgagaatcgtaccat |
234 |
Q |
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||||||||||||||||| |
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| T |
48475437 |
gttgagaatcgtaccat |
48475421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 14124008 - 14123976
Alignment:
| Q |
33 |
atattcttgatttggattgaagggagctaaatt |
65 |
Q |
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| T |
14124008 |
atatttttgatttggattgaagggagctaaatt |
14123976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 24345195 - 24345167
Alignment:
| Q |
33 |
atattcttgatttggattgaagggagcta |
61 |
Q |
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| T |
24345195 |
atattcttgatttggattgaagggagcta |
24345167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 8532287 - 8532316
Alignment:
| Q |
36 |
ttcttgatttggattgaagggagctaaatt |
65 |
Q |
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| T |
8532287 |
ttcttgatttggattgaagggagctaaatt |
8532316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 35051048 - 35051016
Alignment:
| Q |
33 |
atattcttgatttggattgaagggagctaaatt |
65 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
35051048 |
atatttttgatttggattgaagggagctaaatt |
35051016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 20006358 - 20006390
Alignment:
| Q |
33 |
atattcttgatttggattgaagggagctaaatt |
65 |
Q |
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||||| ||||||||||||||||||||||||||| |
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|
| T |
20006358 |
atatttttgatttggattgaagggagctaaatt |
20006390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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