View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_20 (Length: 233)
Name: NF7055_low_20
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 34479121 - 34478906
Alignment:
| Q |
17 |
aagttgaccatataatgacaaccataatgctatcagaatcccttaatttaattacaataatgcacttcaaatttaaaaacttgtggtacttatgataacc |
116 |
Q |
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| T |
34479121 |
aagttgaccatataatgacaaccataatgctatcagaatcccttaatttaattacaataatgcacttcaaatttaaaaacttgtggtacttatgataacc |
34479022 |
T |
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| Q |
117 |
aactaaatgagctccatttttcaattattattatcaaacagcatgaaagtgaaatataatgttcacgataaataagcattaagaaatagggaaataccaa |
216 |
Q |
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| T |
34479021 |
aactaaatgagctccatttttcaattataattatcaaacagcatgaaagtgaaatat-atgttcatgataaataagcattaagaaatagggaaataccaa |
34478923 |
T |
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| Q |
217 |
aagaatttgttaagaag |
233 |
Q |
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||||||||||||||||| |
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| T |
34478922 |
aagaatttgttaagaag |
34478906 |
T |
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