View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_5 (Length: 471)
Name: NF7055_low_5
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_5 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 11386888 - 11387333
Alignment:
| Q |
10 |
aagaatattaagcagagaaaggggaacatccttatgccgacaatgtaactcaataataagacatgaatgtccatcacaaagttgaagagttcccggtttg |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11386888 |
aagaaaattaagcagagaaaggggaacatccttatgccgacaatgtaactcaataataagacatgaatgtccatcacaaagttgaagagttcccggtttg |
11386987 |
T |
|
| Q |
110 |
gtccgggaattggtttcatcatgatcatt-acggataattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaag |
208 |
Q |
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||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11386988 |
gtctgggaattggtttcatcatgatcatttaccgataattttacgccactcggtatcaaatccgatcaccttggttacataattgtctgtagggtgtaag |
11387087 |
T |
|
| Q |
209 |
aaagacgatatatgtttgtcaatcactttcttttgatttgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcataca |
308 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11387088 |
aaagacgacatatgtttgtcaatcactttcttttgatttgtaatagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcataca |
11387187 |
T |
|
| Q |
309 |
tgatgttctctgcttcacaaaatacggatgccacggttatttatagggataggcgtttgtgacatttgatgagtagtataattccaaaaacaccttccaa |
408 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11387188 |
tgatgttctctgcttcacaaaatagggatgccacggttatttatagggataagcgtgtgtgacatttgatcagtagtataattccaaaaacaccttccaa |
11387287 |
T |
|
| Q |
409 |
accattaaaacacctctccagataaccatcaaacctaccaaaaacc |
454 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11387288 |
accattaaaacacctctccagataaccatcaaacctaccaaaaacc |
11387333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 51 - 390
Target Start/End: Original strand, 11392924 - 11393263
Alignment:
| Q |
51 |
aatgtaactcaataataagacatgaatgtccatcacaaagttgaagagttcccggtttggtccgggaattggtttcatcatgatcattacggataatttt |
150 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||| ||||||||| |
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| T |
11392924 |
aatgtaactcaataataagacacgaatgtccatcacaaagttgaatagttcccggtttggtccgggaattggttccatcttgatccttatcgataatttt |
11393023 |
T |
|
| Q |
151 |
acgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatatatgtttgtcaatcactttcttttgatttgta |
250 |
Q |
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||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
11393024 |
acgccactcagtatcaaatccgatcaccttggttccatgattgtctgtagggcgtaagaaagacgatatatgttcgtcaatcactttcttttgatctgta |
11393123 |
T |
|
| Q |
251 |
atagtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatacatgatgttctctgcttcacaaaatacggatgccacggttattt |
350 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| || ||| ||||||||||||||||| |
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| T |
11393124 |
atggtggttttgatttccattccatttagctcaaacgatagaactttggtgtcatgcatgaggtattctgcttcataacatagggatgccacggttattt |
11393223 |
T |
|
| Q |
351 |
atagggataggcgtttgtgacatttgatgagtagtataat |
390 |
Q |
| |
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||| |||||||||||||||| |||| || ||||||||||| |
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| T |
11393224 |
ataaggataggcgtttgtgatatttaatcagtagtataat |
11393263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 453
Target Start/End: Complemental strand, 46743224 - 46743175
Alignment:
| Q |
405 |
ccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaac |
453 |
Q |
| |
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|||||||||||||| |||| |||| | ||||||||||||||||||||||| |
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| T |
46743224 |
ccaaaccattaaaaaacctatccaaaataaccatcaaacctaccaaaaac |
46743175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 47896514 - 47896576
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccagataaccatcaaacctaccaaaaacc |
454 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
47896514 |
ccaaaaacaccctccaaaccattaaaaaacctctccaaataaccatcaaacctaccaaaaacc |
47896576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 454
Target Start/End: Complemental strand, 27787078 - 27787028
Alignment:
| Q |
405 |
ccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaacc |
454 |
Q |
| |
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|||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
27787078 |
ccaaaccattaaaaaacctctccaaaataaccatcaaacctaccaaaaacc |
27787028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 10365582 - 10365644
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccagataaccatcaaacctaccaaaaacc |
454 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
10365582 |
ccaaaaacaccctccaaaccgttaaaaaacctctccaaataaccatcaaacctaccaaaaacc |
10365644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 239
Target Start/End: Original strand, 17198494 - 17198613
Alignment:
| Q |
120 |
tggtttcatcatgatcattacggataattttacgccactcggtatcaaatccgatcaccttggttccataattgtctgtagggtgtaagaaagacgatat |
219 |
Q |
| |
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|||||||||| |||| ||| ||||||| ||||||||||||||||| || || ||||| ||||| | ||||| |||||| |||||||||| ||||| |
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| T |
17198494 |
tggtttcatcgtgattgttatagataattggacgccactcggtatcaatcccaataaccttcgttccgtgattgttggtagggcgtaagaaagatgatat |
17198593 |
T |
|
| Q |
220 |
atgtttgtcaatcactttct |
239 |
Q |
| |
|
||| | |||||||| ||||| |
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| T |
17198594 |
atgatcgtcaatcaatttct |
17198613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 34293863 - 34293802
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaa |
452 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||| | |||||||||||||||||||||| |
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|
| T |
34293863 |
ccaaaaacaccctccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaa |
34293802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 11366551 - 11366611
Alignment:
| Q |
393 |
caaaaacaccttccaaaccattaaaacacctctccagataaccatcaaacctaccaaaaac |
453 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
11366551 |
caaaaacaccctccaaaccgttaaaaaacctctccaaataaccatcaaacctaccaaaaac |
11366611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 9566627 - 9566690
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccaga-taaccatcaaacctaccaaaaacc |
454 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||| | |||||||||||||||||||||||| |
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|
| T |
9566627 |
ccaaaaacaccctccaaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacc |
9566690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 269747 - 269809
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccagataaccatcaaacctaccaaaaacc |
454 |
Q |
| |
|
||||||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
269747 |
ccaaaaataccctccaaaccgttaaaaaacctctccaaataaccatcaaacctaccaaaaacc |
269809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 38499028 - 38499090
Alignment:
| Q |
392 |
ccaaaaacaccttccaaaccattaaaacacctctccagataaccatcaaacctaccaaaaacc |
454 |
Q |
| |
|
||||||||||| |||||| | |||||| ||||||| | |||||||| |||| ||||||||||| |
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| T |
38499028 |
ccaaaaacaccctccaaatcgttaaaaaacctctctaaataaccattaaacataccaaaaacc |
38499090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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