View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_8 (Length: 371)
Name: NF7055_low_8
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 33120209 - 33119860
Alignment:
| Q |
5 |
caaaaacaatggtcatacaactaattactccaaaagccaggaatgtccatgcagtcccaagaagttctatgacagataaaaaggattgagaaacaatgag |
104 |
Q |
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| T |
33120209 |
caaaaacaatggccatacaactaattactccaaaagccaggaatgtccatgcagtcccaagaagttctatgacagataaaaaggattgagaaacaatgag |
33120110 |
T |
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| Q |
105 |
gttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
33120109 |
gttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagagttgataacccatggaaccgttcccatt |
33120010 |
T |
|
| Q |
205 |
cctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatccttgtgtgtaccaatccctatgctgtgatt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || || |||||| |
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| T |
33120009 |
cctggtgaaaagaatattatgtagactgctaaaccaactatcgccaaccatcctatattgcttggacatccttgtgtgtaccaatctctgtgttgtgatg |
33119910 |
T |
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| Q |
305 |
cgcaacgctccttagacgcgtcatcttggattaagcatgcccctggtttt |
354 |
Q |
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|||| ||||||||||| ||||| |||||||||||| ||||||| |||||| |
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| T |
33119909 |
cgcagcgctccttagatgcgtcgtcttggattaagtatgcccccggtttt |
33119860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 287
Target Start/End: Complemental strand, 33116924 - 33116715
Alignment:
| Q |
78 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagag |
177 |
Q |
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|||||||||||||||||||||||| ||||| |||| ||| || ||||||| || ||||||||||| | ||||||||||||||||||||| || |||||| |
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| T |
33116924 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
33116825 |
T |
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| Q |
178 |
ttgataacccatggaacagttcccattcctggtgaaaagaatattatgtagactgctaaaccaactattgccaaccatcctattttgcttggacatcctt |
277 |
Q |
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|| || |||||||||||||| |||||||| ||||||||||| | ||| |||| || || |||| | ||| | ||| || | |||||| |||||||||| |
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| T |
33116824 |
tttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagccaatccaatcagtgcaagccaacccaatttgctaggacatcctt |
33116725 |
T |
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| Q |
278 |
gtgtgtacca |
287 |
Q |
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|||| ||||| |
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| T |
33116724 |
gtgtatacca |
33116715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 21491884 - 21492025
Alignment:
| Q |
88 |
gattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataaccc |
187 |
Q |
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||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| | ||||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
|
| Q |
188 |
atggaacagttcccattcctggtgaaaagaatattatgtaga |
229 |
Q |
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||||||| ||||||||||| || || |||||||| ||||||| |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaatatgatgtaga |
21492025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 123 - 220
Target Start/End: Original strand, 21558479 - 21558576
Alignment:
| Q |
123 |
tgttgatgctattcctccacatattcctctataccttaaagggtatatttcagagttgataacccatggaacagttcccattcctggtgaaaagaata |
220 |
Q |
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|||||| || |||||||||||||||||||| || ||||| || |||||||||||||| | |||||||||||| ||||||||||||||||| ||||||| |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaata |
21558576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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