View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7055_low_9 (Length: 366)
Name: NF7055_low_9
Description: NF7055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7055_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 7590420 - 7590065
Alignment:
| Q |
1 |
agtaaccgtccccaaccattcaatttcacaaaacagaaacggtcaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagc |
100 |
Q |
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| T |
7590420 |
agtaaccgtccccaaccattcaatttcactaaacataaacggtaaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagc |
7590321 |
T |
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| Q |
101 |
attagtgaaggataccaggagctacatggggattggctgctagtctcaagaagnnnnnnnnctgccaataaccagcaatcaaaccaatcaaagcaagcta |
200 |
Q |
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| T |
7590320 |
attagtgaaggatcccaggagctacatggtgattggctgctagtctcaagaagaaaaaaaactgccaatagccagcaatcaaaccaatcaaagcaagcta |
7590221 |
T |
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| Q |
201 |
ataataccaaagctaacagattttcggtcttcaataacctggcccacctaaccaaacctaaaagcttttctcctaaacctattactattgtcacaacacg |
300 |
Q |
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| T |
7590220 |
ataataccaaagctaataaattttcggtcttcaataacctggcccaccaaaccaaacctaaaagcttttctcctaaacctattactgttgtcacaacacg |
7590121 |
T |
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| Q |
301 |
tgatcccaaaacttcaactgaattgaagcgccgccgaaacaatgatgataatgatg |
356 |
Q |
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| T |
7590120 |
tgatcccaaaacttcaactgaattgaagtgccgccgaaacaatgatgataatgatg |
7590065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 26711762 - 26711617
Alignment:
| Q |
5 |
accgtccccaaccattcaatttcacaaaacagaaacggtcaggaattaaatgttagtaatagtgaaggttctatttttaatggtgatgttattagcatta |
104 |
Q |
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| T |
26711762 |
accgtccctaaccattcaatttcacaaaacacaaacggtcaagaattaaatgtcattaatagcgaaggttccatttttaatggaggtgttattaccattg |
26711663 |
T |
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| Q |
105 |
gtgaaggataccaggagctacatggggattggctgctagtctcaag |
150 |
Q |
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| T |
26711662 |
atgaaggtacccaggagctacatggggattggctccttgtctcaag |
26711617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 356
Target Start/End: Complemental strand, 26711335 - 26711144
Alignment:
| Q |
165 |
ccaataaccagcaatcaaaccaatcaaagcaagctaataataccaaagctaacagattttcggtcttcaataacctggcccacctaaccaaacctaaaag |
264 |
Q |
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| T |
26711335 |
ccaatagccaacagtcaaactactcaaagcaagccaataattccaaagctaacagattttctgtgctgaataacatgacccaccaaaccaaaattaaaag |
26711236 |
T |
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| Q |
265 |
cttttctcctaaacctattactattgtcacaacacgtgatcccaaaacttcaactgaattgaagcgccgccgaaacaatgatgataatgatg |
356 |
Q |
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| T |
26711235 |
ccatcctcctagacctattccttatgacgcaacacgcgatcccaaaaccttaacagaactgaagcgccgccgaaataatgaggacaatgatg |
26711144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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