View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7056_high_2 (Length: 512)
Name: NF7056_high_2
Description: NF7056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7056_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 494
Target Start/End: Original strand, 49665789 - 49666274
Alignment:
| Q |
9 |
aataagatttcagaattttgctatatattgataccaaaccactgttattcaatcacacttaactcttactttgttctctcttctcaatggcttccttaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
49665789 |
aataagatttcagaattttgctatatattgataccaaaccactgttattcaatcacacttaactctttctttgttctctcttttcaatggcttccttaag |
49665888 |
T |
|
| Q |
109 |
agtgaagaaagaaatcaataaacctaaaagccgcaaaaaccaaacacccataagcatcgtaaaaactcttccaaacgatttgttggttaatatcgtgggg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49665889 |
agtgaagaaagaaatcaataaacctaaaagccgcaaaaaccaaacacccataagcatcgtaaaaactcttccaaacgatttgttggttaatatcgtgggg |
49665988 |
T |
|
| Q |
209 |
aaggtcgcatcacgttctatggctgatctttgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgtttatcaacatgcag |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49665989 |
aaggtcgcatcacgttccatggctgatctttgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgtttatcaacatgcag |
49666088 |
T |
|
| Q |
309 |
ctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggtaacttggagattac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49666089 |
ctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggtaacttggagattac |
49666188 |
T |
|
| Q |
409 |
ttatcgtgaaggaatggtgcaatatttcagtactttgatggtggatttaggtttgaagaatttgaagaaggctgcgctagagggtc |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49666189 |
ttatcgtgaaggaatggtgcaatatttcagtactttgatggtggatttaggtttgaagaatttgaagaaggctgcgctagagggtc |
49666274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 95 - 494
Target Start/End: Complemental strand, 50936508 - 50936114
Alignment:
| Q |
95 |
atggcttccttaagagtgaagaaagaaatcaataaacctaaaagccgcaaaaaccaaacacccataagcatcgtaaaaactcttccaaacgatttgttgg |
194 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| | ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
50936508 |
atggcttccttaagagttaagaaagagatcaataaacctaaaagccgtaaaaaccagaaacctataagcctcgtaaaaactcttccaaacgatttgttgg |
50936409 |
T |
|
| Q |
195 |
ttaatatcgtggggaaggtcgcatcacgttctatggctgatctttgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgt |
294 |
Q |
| |
|
|||||| ||||| |||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50936408 |
ttaataacgtggcgaaggttgcttcacgttcgatgattgatctttgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacgattacgt |
50936309 |
T |
|
| Q |
295 |
ttatcaacatgcagctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggt |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||| | |||||| ||| |
|
|
| T |
50936308 |
ttatcaacatgcagctatggataagtttgcattggt-----ttccatggttcaccgatgaaaaagaaacctcgttctttagccgttgtagagaaagcggt |
50936214 |
T |
|
| Q |
395 |
aacttggagattacttatcgtgaaggaatggtgcaatatttcagtactttgatggtggatttaggtttgaagaatttgaagaaggctgcgctagagggtc |
494 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
50936213 |
aacttggagattatttatcgtgaaggaatggtgcaatatttcagtactttgatggtggatttaggtttgaagaatttgaagaagactgcactagagggtc |
50936114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 95 - 494
Target Start/End: Original strand, 14572620 - 14573022
Alignment:
| Q |
95 |
atggcttccttaagagtgaagaaagaaatcaataaacctaaaagccgcaaaaaccaaacacccataagcatcgtaaaaactcttccaaacgatttgttgg |
194 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| ||||| | ||||||| | |||| |||||||| |||||| || ||||||| || || |||| |
|
|
| T |
14572620 |
atggctttgttaagagcaaagaaagaaatcaataaattcaaaaggcacaaaaacgatgcaccaataagcatagtaaaagcttttccaaatgacttattgg |
14572719 |
T |
|
| Q |
195 |
ttaatatcgtggggaaggtcgcatcacgttctatggctgatctttgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgt |
294 |
Q |
| |
|
|| |||| ||||| || || || ||| |||| |||| |||| | | |||||| ||||| || |||||||| ||||| | ||||||||||||| ||| ||| |
|
|
| T |
14572720 |
ttgatattgtgggaaaagttgcttcaggttcaatggttgatttatacaaaataaaattgagttgcaaagaatttctcagtgcttcagaagaccgtttcgt |
14572819 |
T |
|
| Q |
295 |
ttatcaacatgcagctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggt |
394 |
Q |
| |
|
|||||||||||| || ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
14572820 |
gtatcaacatgcatctttggataagtttgcattaattccacttccatggttcaccgaagaaaaagaaacctcgttcttgagacgttgtagggaaagtggt |
14572919 |
T |
|
| Q |
395 |
aacttggagattacttatcgtgaaggaatggtgcaatatttcagtactttgatggtg---gatttaggtttgaagaatttgaagaaggctgcgctagagg |
491 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| ||||||||| ||||||| |||| || |||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
14572920 |
aatttggagattctttatcgtgaaggaatggagcaatattttagtacttcgatgttgaataatttaggttttgagaatttgaagaaggctgcattagagg |
14573019 |
T |
|
| Q |
492 |
gtc |
494 |
Q |
| |
|
||| |
|
|
| T |
14573020 |
gtc |
14573022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 293 - 462
Target Start/End: Original strand, 34304690 - 34304859
Alignment:
| Q |
293 |
gtttatcaacatgcagctatggataagtttgctttggttccacttccatggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtg |
392 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| ||| |||||||| ||||||||||| |||||| |||||| ||||||||||||||| | |||| | |
|
|
| T |
34304690 |
gtttatcaacatgcagcactagataaatttgcattgattccacttgcatggttcaccagtgaaaaggaaaccatgttcttgagtcgttgtagggaaatgg |
34304789 |
T |
|
| Q |
393 |
gtaacttggagattacttatcgtgaaggaatggtgcaatatttcagtactttgatggtggatttaggttt |
462 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
34304790 |
gtaatttggagattatttaccgtgaaggaatggtgcaatattttagcactttgatggtgaatttaggttt |
34304859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 447
Target Start/End: Complemental strand, 30997625 - 30997417
Alignment:
| Q |
239 |
tgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgtttatcaacatgcagctatggataagtttgctttggttccacttc |
338 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||| ||||||| ||| | || |||||||||||||| | | |||||| |||||||| |||||| | |
|
|
| T |
30997625 |
tgcaaaatcaaattaagttggaaagattttcctaacgcttcagtagatcgatatgtttatcaacatgcgtcattagataaggttgctttgattccacatt |
30997526 |
T |
|
| Q |
339 |
catggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggtaacttggagattacttatcgtgaaggaatggtgcaatatttcag |
438 |
Q |
| |
|
|||| |||| |||||||||||||||| | || |||| |||| | |||||| || | || ||||||| |||| ||||||||||| ||||||||||| | |
|
|
| T |
30997525 |
catgcttcatcgatgaaaaagaaaccacatttttgataagttgtagtgaaagtagtcattttgagattatttattgtgaaggaatgatgcaatatttctg |
30997426 |
T |
|
| Q |
439 |
tactttgat |
447 |
Q |
| |
|
||||||||| |
|
|
| T |
30997425 |
tactttgat |
30997417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 481
Target Start/End: Complemental strand, 31001601 - 31001362
Alignment:
| Q |
239 |
tgcaaaatcaaattaagctgcaaagagtttcttaatgcttcagaagacggttacgtttatcaacatgcagctatggataagtttgctttggttccacttc |
338 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| || || ||| |||||||||||||||||| | | |||||||| ||||| |||||| | |
|
|
| T |
31001601 |
tgcaaaatcaaattgagttgcaaagattttcttaacattttagcagatctttacgtttatcaacatgcgtcactatataagtttcctttgattccacatt |
31001502 |
T |
|
| Q |
339 |
catggttcaccgatgaaaaagaaacctcgttcttgagtcgttgcaaagaaagtggtaacttggagattacttatcgtgaaggaatggtgcaatatttcag |
438 |
Q |
| |
|
||||||||||||||||||| |||||| |||| |||| ||| | |||| |||||| ||||||||| ||||| |||||||||||||||||| || | |
|
|
| T |
31001501 |
catggttcaccgatgaaaaggaaaccacgtttttgatacgtagg---gaaaatggtaatttggagattctttatcatgaaggaatggtgcaataattttg |
31001405 |
T |
|
| Q |
439 |
tactttgatggtggatttaggtttgaagaatttgaagaaggct |
481 |
Q |
| |
|
|| |||||||||| |||| | ||| ||||| |||| |||||| |
|
|
| T |
31001404 |
tattttgatggtgaatttggattttgagaatctgaaaaaggct |
31001362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University