View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7056_high_8 (Length: 241)
Name: NF7056_high_8
Description: NF7056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7056_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 24568519 - 24568735
Alignment:
| Q |
9 |
gtttcgtgttaattgcaaccggaacaatcctatcggttaattcagcgaaaagcgcgctgaatcgtagaagaaatggttccctacaagtagttccttccgg |
108 |
Q |
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| T |
24568519 |
gtttcgtgttaattgcaaccggtacaatcctatcggttaattcagcgaaaagcgcgctgaatcgtagaagaaatggttccctacaagtcgttccttccgg |
24568618 |
T |
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| Q |
109 |
acaaatcactaggtcaccttcttcaagtaatttccttatatttgctgcatctttttccctttctcttgaaagtgccactgctttaataggtgaaattatt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24568619 |
acaaatcactaggtcaccttcttcaagtaatttccttatatttgctgcatctttttccctttctcttgaaagtgccactgctttaattggtgaaattatt |
24568718 |
T |
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| Q |
209 |
tcactgaatttactaat |
225 |
Q |
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||||||||||||||||| |
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| T |
24568719 |
tcactgaatttactaat |
24568735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 4470473 - 4470663
Alignment:
| Q |
32 |
acaatcctatcggttaattcagcgaaaagcgcgctgaatcgtagaagaaatggttccctacaagtagttccttccggacaaatcactaggtcaccttctt |
131 |
Q |
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||||||||||||||||| || || ||||| || || || | | |||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
4470473 |
acaatcctatcggttaactcggcaaaaagagcactaaacctcaatagaaatggctccctacaagtcgttccttccggacaaatcactaagtcaccttctt |
4470572 |
T |
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| Q |
132 |
caagtaatttccttatatttgctgcatctttttccctttctcttgaaagtgccactgctttaataggtgaaattatttcactgaatttact |
222 |
Q |
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|||| |||||| |||||||||| |||||| | || ||||| |||||||| || || ||||| ||||| ||||||||||| |||||||||| |
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| T |
4470573 |
caagcaatttctttatatttgccgcatctctatctctttcccttgaaagcgcaacggcttttataggcgaaattatttcggtgaatttact |
4470663 |
T |
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