View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7056_low_10 (Length: 219)

Name: NF7056_low_10
Description: NF7056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7056_low_10
NF7056_low_10
[»] scaffold1312 (1 HSPs)
scaffold1312 (5-201)||(1350-1546)
[»] chr7 (2 HSPs)
chr7 (5-117)||(26374562-26374674)
chr7 (52-89)||(6198479-6198516)
[»] chr8 (3 HSPs)
chr8 (57-126)||(21586497-21586566)
chr8 (57-147)||(760091-760181)
chr8 (5-121)||(43215796-43215911)
[»] chr5 (1 HSPs)
chr5 (57-126)||(33011547-33011616)
[»] chr3 (2 HSPs)
chr3 (57-126)||(12744020-12744089)
chr3 (38-115)||(10974187-10974264)
[»] scaffold0211 (1 HSPs)
scaffold0211 (52-191)||(18451-18590)
[»] chr4 (6 HSPs)
chr4 (52-191)||(6554490-6554629)
chr4 (57-124)||(39977214-39977281)
chr4 (30-135)||(42727146-42727251)
chr4 (57-126)||(284293-284362)
chr4 (68-198)||(13233018-13233145)
chr4 (52-121)||(24180971-24181040)
[»] scaffold0021 (1 HSPs)
scaffold0021 (38-115)||(126828-126905)
[»] chr1 (2 HSPs)
chr1 (52-197)||(43385112-43385257)
chr1 (63-113)||(7844621-7844671)
[»] scaffold0114 (1 HSPs)
scaffold0114 (52-191)||(36989-37128)
[»] chr2 (3 HSPs)
chr2 (57-191)||(31965844-31965978)
chr2 (68-199)||(5787220-5787351)
chr2 (52-113)||(34425583-34425644)
[»] scaffold0159 (1 HSPs)
scaffold0159 (68-199)||(31593-31724)
[»] chr6 (1 HSPs)
chr6 (37-113)||(26594995-26595071)
[»] scaffold0380 (1 HSPs)
scaffold0380 (31-126)||(16816-16911)


Alignment Details
Target: scaffold1312 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 201
Target Start/End: Complemental strand, 1546 - 1350
Alignment:
Q  5 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 104  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1546 aatgacattgacatcacaatttctcccaaaaaatttaggcgcacgtttatgagtcatttcacttatatcttattcaacatctattattcaatacattgta 1447  T
Q  105 gaactttaactcttatttgacaaaataacatatcttcctcaagtataagattctctgtttccgtaattacgtgacatagtcaaataaagtcaaactg 201  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  1446 gaactttaactcttatttgacacaataacatctcttcctcaagtataagattcttcgtttccgtaattacgtgacatagtcaaataaagtcaaactg 1350  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 26374562 - 26374674
Alignment:
Q  5 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 104  Q
    ||||| || |||| ||||||||||||||||   |||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||  | ||| |||    
T  26374562 aatgatattgacaccacaatttctcccaaattctttaggcacatgtttgtgagtcatctcacttatatcttattcaacatctactattcctttcatggta 26374661  T
Q  105 gaactttaactct 117  Q
    |||||||| ||||    
T  26374662 gaactttatctct 26374674  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 6198516 - 6198479
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctatt 89  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  6198516 tatgagtcatttcacttatatgttattcatcatctatt 6198479  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 21586497 - 21586566
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 126  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||||    
T  21586497 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgaca 21586566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 760181 - 760091
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaag 147  Q
    |||||||||||||||| |||||| ||||||| | ||   || |||||||||||| || || ||||||||| | |||||| ||| |||||||    
T  760181 gtcatttcacttatatgttattccacatctactctttcttctattgtagaacttaaaatcatatttgacacattaacatctctccctcaag 760091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 43215796 - 43215911
Alignment:
Q  5 aatgagatggacatcacaatttctcccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgta 104  Q
    |||||||| |||| |||| |||   |||||| |||||| |||| || |||||||||||| |||||||| ||||||| |||||| | ||  ||| ||||||    
T  43215796 aatgagattgacaccacatttttatccaaaatatttagacacatgtatatgagtcattt-acttatatgttattcatcatctactctttcatctattgta 43215894  T
Q  105 gaactttaactcttatt 121  Q
     || |||||||| ||||    
T  43215895 aaattttaactcatatt 43215911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 33011547 - 33011616
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 126  Q
    ||||| |||| ||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  33011547 gtcatctcacatatatgttattcaacatctactattccatcaattgtagaactttaactcttatttgaca 33011616  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 12744020 - 12744089
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 126  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||||    
T  12744020 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttgaca 12744089  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 10974187 - 10974264
Alignment:
Q  38 tttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaact 115  Q
    |||||||||| || ||||| |||| ||||||||| ||||||||||||||| | | | |||||||||||||||||||||    
T  10974187 tttaggcacatgtatatgactcatctcacttataacttattcaacatctactttaccatccattgtagaactttaact 10974264  T

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Target: scaffold0211 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 18451 - 18590
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 151  Q
    |||||||||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | ||||| || |||||| ||||  |||||| |     
T  18451 tatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgactaattaacatctcttattcaagtttg 18550  T
Q  152 agattctctgtttccgtaattacgtgacatagtcaaataa 191  Q
      | ||||||| ||| ||||||||||||||||||||||||    
T  18551 caactctctgtgtccataattacgtgacatagtcaaataa 18590  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 6554629 - 6554490
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 151  Q
    |||||||||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | |||||| | |||||| ||||  |||||| |     
T  6554629 tatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttg 6554530  T
Q  152 agattctctgtttccgtaattacgtgacatagtcaaataa 191  Q
      | ||||||| ||| ||||||||||||||||||||||||    
T  6554529 caactctctgtgtccataattacgtgacatagtcaaataa 6554490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Complemental strand, 39977281 - 39977214
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttga 124  Q
    ||||| |||||||||| |||||||||||||| ||||| ||| |||||||||||||||||| |||||||    
T  39977281 gtcatctcacttatatgttattcaacatctactattccatcaattgtagaactttaactcatatttga 39977214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 42727146 - 42727251
Alignment:
Q  30 ccaaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatcta-ttattcaatccattgtagaactttaactcttatttgacaaa 128  Q
    |||||||||||||||||| | ||| | ||||| |||| ||||| |||||||| ||||| | |||| ||| |||||||||||||||||| ||||||||| |    
T  42727146 ccaaaaaatttaggcacatgcttacgggtcatctcacatatatgttattcaatatctactcattc-atctattgtagaactttaactcatatttgacaca 42727244  T
Q  129 ataacat 135  Q
     ||||||    
T  42727245 ttaacat 42727251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 284362 - 284293
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 126  Q
    ||||| |||| ||||| ||| |||||||||| ||||| ||| |||||||||||||||||| |||||||||    
T  284362 gtcatctcacatatatgttactcaacatctactattccatcaattgtagaactttaactcatatttgaca 284293  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 13233145 - 13233018
Alignment:
Q  68 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtataagattctctgtttccg 167  Q
    ||||| ||||||||||| || ||||| ||| |||||||||||||||||| || |||||| |  ||||| |  ||| ||||| |  || ||||||| ||||    
T  13233145 tatatgttattcaacatatactattccatcaattgtagaactttaactcatacttgacata--aacatct-atccccaagtgtgcgactctctgtgtccg 13233049  T
Q  168 taattacgtgacatagtcaaataaagtcaaa 198  Q
    ||||||  | |||||||||||||| ||||||    
T  13233048 taattatatcacatagtcaaataaggtcaaa 13233018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 24180971 - 24181040
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatt 121  Q
    ||||||| ||||||||||||| ||||||| |||||| | ||| ||| |||||| || |||||||| ||||    
T  24180971 tatgagttatttcacttatatgttattcatcatctactcttccatctattgtaaaattttaactcatatt 24181040  T

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Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 126828 - 126905
Alignment:
Q  38 tttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaact 115  Q
    |||||||||| || ||||| |||| ||||||||| ||||||||||||||| | | | |||||||||||||||||||||    
T  126828 tttaggcacatgtatatgactcatctcacttataacttattcaacatctactttaccatccattgtagaactttaact 126905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 197
Target Start/End: Original strand, 43385112 - 43385257
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 151  Q
    |||||||||| |||| ||||| |||||||||||||| ||||| ||| ||| |||||||||||||| || |||||| | |||||| | | || | ||| |     
T  43385112 tatgagtcatctcacatatatgttattcaacatctactattccatcaattctagaactttaactcatacttgacatattaacatctatcccccgagtgtg 43385211  T
Q  152 agattctctgtttccgtaattacgtgacatagtcaaataaagtcaa 197  Q
     |  ||||| | ||||||||||  |||||||||||||||| |||||    
T  43385212 cggctctctatgtccgtaattatatgacatagtcaaataaggtcaa 43385257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 7844621 - 7844671
Alignment:
Q  63 tcacttatatcttattcaacatctattattcaatccattgtagaactttaa 113  Q
    |||||||||| || ||||||||||||||||  ||||| |||||||||||||    
T  7844621 tcacttatatgttgttcaacatctattattgcatccaatgtagaactttaa 7844671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 37128 - 36989
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtata 151  Q
    ||||| |||| |||||||||| |||||||| ||||| | ||| ||||| | ||||| ||||||||  | |||||| | |||||| ||||  |||||| |     
T  37128 tatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctcttattcaagtttg 37029  T
Q  152 agattctctgtttccgtaattacgtgacatagtcaaataa 191  Q
      | ||||||| ||| |||||||||||| |||||||||||    
T  37028 caactctctgtgtccataattacgtgacgtagtcaaataa 36989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 191
Target Start/End: Original strand, 31965844 - 31965978
Alignment:
Q  57 gtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctcaagtataagatt 156  Q
    ||||| |||||||||| |||||||| ||||| | ||| ||| | | ||||| |||||||| || |||||| | |||| | ||||  |||||| |   | |    
T  31965844 gtcatctcacttatatgttattcaaaatctactcttctatctactatagaattttaactcatacttgacacattaacttctcttattcaagtttgcaact 31965943  T
Q  157 ctctgtttccgtaattacgtgacatagtcaaataa 191  Q
    |||||| ||| ||||||||||||||||||||||||    
T  31965944 ctctgtgtccataattacgtgacatagtcaaataa 31965978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 5787220 - 5787351
Alignment:
Q  68 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctc-aagtataagattctctgtttcc 166  Q
    ||||| |||||||||||||| ||||| ||| ||||||| |||||||||| ||  ||||| | ||||||||  ||||| |||| |  || | | ||| |||    
T  5787220 tatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacatat-atcctcaaagtgtgtgactttatgtgtcc 5787318  T
Q  167 gtaattacgtgacatagtcaaataaagtcaaac 199  Q
    |||||||  |||||||||||||||| |||||||    
T  5787319 gtaattatatgacatagtcaaataaggtcaaac 5787351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 34425583 - 34425644
Alignment:
Q  52 tatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaa 113  Q
    ||||||| || |||||||||| || ||||||||||||||||  ||||| ||| |||||||||    
T  34425583 tatgagttatatcacttatatgttgttcaacatctattattgcatccaatgtggaactttaa 34425644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 31593 - 31724
Alignment:
Q  68 tatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgacaaaataacatatcttcctc-aagtataagattctctgtttcc 166  Q
    ||||| |||||||||||||| ||||| ||| ||||||| |||||||||| ||  ||||| | ||||||||  ||||| |||| |  || | | ||| |||    
T  31593 tatatgttattcaacatctactattccatcaattgtagtactttaactcatacatgacatattaacatat-atcctcaaagtgtgtgactttatgtgtcc 31691  T
Q  167 gtaattacgtgacatagtcaaataaagtcaaac 199  Q
    |||||||  |||||||||||||||| |||||||    
T  31692 gtaattatatgacatagtcaaataaggtcaaac 31724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 26594995 - 26595071
Alignment:
Q  37 atttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaa 113  Q
    ||||||||| | || ||||| |||| ||| ||||||||||||||||||||| ||    |||||||||||||||||||    
T  26594995 atttaggcatatgtatatgactcatctcagttatatcttattcaacatctactacaatatccattgtagaactttaa 26595071  T

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Target: scaffold0380 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 16911 - 16816
Alignment:
Q  31 caaaaaatttaggcacacgtttatgagtcatttcacttatatcttattcaacatctattattcaatccattgtagaactttaactcttatttgaca 126  Q
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T  16911 caaaatatttaggcacatatatatgggtcatctcacatatatgttattaaacatatatcattctatcaattgtagaactttaaatcatatctgaca 16816  T

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