View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7056_low_5 (Length: 355)
Name: NF7056_low_5
Description: NF7056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7056_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 43367809 - 43368136
Alignment:
| Q |
18 |
actattatatattctttctttctattttgaattcttactattaaactttgttactgctttgattctttagagttaattttagttttctttcactttatcc |
117 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43367809 |
actattatatattctttcttgcttttttgaattcttactattaaactttgttactgctttgattctttagagttaattt--gttttctttcactttatcc |
43367906 |
T |
|
| Q |
118 |
ttaaatagaaggaaaacgtgtatttgtttaatacgacgaattattcaggataattcaagtttaattattgaattgaacaattcatggataagttttactt |
217 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43367907 |
ttaaatagaaggaaaatgtgtatttgtttattacgacaaattattcaggataattcaagtttaattattgaattgaacaactcatggataagttttactt |
43368006 |
T |
|
| Q |
218 |
actccagagtcgaactctacattactatgacctcttccccttaataatctcaaggataacacgnnnnnnnnnnctctttcaattctattggaaacttcca |
317 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43368007 |
actccagagtcgaactctacattactaagacctcttccccttaataatctcaaggataacacg--aaaaaaaactctttcaattctattggaaacttcca |
43368104 |
T |
|
| Q |
318 |
aaacaaattatagggatgggtataacaccaaa |
349 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
43368105 |
aaacaaattatagggatgggtataagaccaaa |
43368136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University