View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7056_low_6 (Length: 335)
Name: NF7056_low_6
Description: NF7056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7056_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 8401562 - 8401262
Alignment:
| Q |
16 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || || | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401562 |
atcacaattgaatcaagaattgttaagttagatcaagaaaaaaaaactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaac |
8401464 |
T |
|
| Q |
116 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8401463 |
acgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaataaatctccattttctctt |
8401364 |
T |
|
| Q |
216 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaactt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8401363 |
tgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaactt |
8401264 |
T |
|
| Q |
316 |
gt |
317 |
Q |
| |
|
|| |
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| T |
8401263 |
gt |
8401262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 8367848 - 8368148
Alignment:
| Q |
16 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaataaatacaaatcttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367848 |
atcacaattgaatcaaagaattgttaagttagatcaagaaaaaa-aactaaaga-cttagaaaagtttgctagcaaattcatcaactgtagttccctcaa |
8367945 |
T |
|
| Q |
115 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttctct |
214 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8367946 |
cacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttctct |
8368045 |
T |
|
| Q |
215 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8368046 |
ttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaact |
8368145 |
T |
|
| Q |
315 |
tgt |
317 |
Q |
| |
|
||| |
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|
| T |
8368146 |
tgt |
8368148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 8423144 - 8422839
Alignment:
| Q |
16 |
atcacaattgaatcaa-gaattgttaagttagatcaagaaaaaa-taaatacaaatc--ttagaaaagtttgctagcaaattcatcaactgtagttccct |
111 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||| | ||||||||| ||||| ||||||||||||||| ||||||||| |
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|
| T |
8423144 |
atcataattgaatcaaagaattgttaagttagatcaagaaaaaagtaaactaaaaacaattagaaaagcttgcttgcaaattcatcaactatagttccct |
8423045 |
T |
|
| Q |
112 |
caacacgagaataagctgattttctagcaagatctcttaattgtgacaaacttcttcctaatttcaaagccaatttaatttcaaacaaatctccattttc |
211 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8423044 |
caacacgagagtaagctgattttatagcaagatctcttaattgtgacaaacttcttcccaatttcaaagccaatttaatttcaaacaaatctccattttc |
8422945 |
T |
|
| Q |
212 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccatacca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422944 |
tctttgttcttcatcttcttctaatatattctcttgaattgaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccatacca |
8422845 |
T |
|
| Q |
312 |
acttgt |
317 |
Q |
| |
|
|||||| |
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|
| T |
8422844 |
acttgt |
8422839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 8376156 - 8376109
Alignment:
| Q |
270 |
aagaatccaccacaagctctatacatttcagaaaccataccaacttgt |
317 |
Q |
| |
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||||| |||||| ||||||||||||||||| ||||||| ||||||||| |
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| T |
8376156 |
aagaaaccaccagaagctctatacatttcaaaaaccatgccaacttgt |
8376109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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