View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7056_low_9 (Length: 223)

Name: NF7056_low_9

Description: NF7056

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7056_low_9

[»] chr7 (5 HSPs)

Alignment Details

Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 5)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 161; E-Value: 5e-86

Query Start/End: Original strand, 18 - 210

Target Start/End: Complemental strand, 20373028 - 20372837

Alignment:

Q	18	aaaacaaaatcagtttgccacatagattttcattaaacagaagaaagaattctcgacaactgggcttcgtctgcatcacaaaaacaatggtgaacctctt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20373028	aaaacaaaatcagtttgccacatagaattttattaaacagaagaaagtattctcgacaaccgggct-cgtctgcatcacagaaacaatggtgaacctctt	20372930	T

Q	118	gcaacaattttctatttgtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattgatatatcatttaagcacaattgtcat	210	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20372929	gcaacgattttctatttgtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattgatatatcatttaagcacaattgtcat	20372837	T

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Target: chr7; HSP #2

Raw Score: 53; E-Value: 1e-21

Query Start/End: Original strand, 86 - 210

Target Start/End: Original strand, 20433178 - 20433301

Alignment:

Q	86	gtctgcatcacaaaaacaatggtgaacctcttgcaacaattttctatttgtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattga	185	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	20433178	gtctgcgtcacaaaaacattggtgaagctcttgaagggattttctatgggcgtggtcaattag-tcaatacaaatatcaacttgatttgatgagcattga	20433276	T

Q	186	tatatcatttaagcacaattgtcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20433277	tatatcatttaagcacaattgtcat	20433301	T

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Target: chr7; HSP #3

Raw Score: 53; E-Value: 1e-21

Query Start/End: Original strand, 86 - 210

Target Start/End: Original strand, 20439651 - 20439774

Alignment:

Q	86	gtctgcatcacaaaaacaatggtgaacctcttgcaacaattttctatttgtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattga	185	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	20439651	gtctgcgtcacaaaaacattggtgaagctcttgaagggattttctatgggcgtggtcaattag-tcaatacaaatatcaacttgatttgatgagcattga	20439749	T

Q	186	tatatcatttaagcacaattgtcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20439750	tatatcatttaagcacaattgtcat	20439774	T

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Target: chr7; HSP #4

Raw Score: 49; E-Value: 3e-19

Query Start/End: Original strand, 86 - 210

Target Start/End: Original strand, 20445378 - 20445501

Alignment:

Q	86	gtctgcatcacaaaaacaatggtgaacctcttgcaacaattttctatttgtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattga	185	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	20445378	gtctgcgtcacaaaaacatcggtgaagctcttgaagggattttctatgggcgtggtcaattag-tcaatacaaatatcaacttgatttgatgagcattga	20445476	T

Q	186	tatatcatttaagcacaattgtcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20445477	tatatcatttaagcacaattgtcat	20445501	T

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Target: chr7; HSP #5

Raw Score: 36; E-Value: 0.00000000002

Query Start/End: Original strand, 135 - 210

Target Start/End: Original strand, 20427010 - 20427084

Alignment:

Q	135	gtgtggtcaattaaatcaatacgattatcaacatgatttgattggcattgatatatcatttaagcacaattgtcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	20427010	gtgtggtcaattag-tcaatacaaatatcaacttgatttgatgggcattaaaaaatcatttaagcacaattgtcat	20427084	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]