View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7057_high_2 (Length: 359)
Name: NF7057_high_2
Description: NF7057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7057_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 33 - 351
Target Start/End: Complemental strand, 34263991 - 34263673
Alignment:
| Q |
33 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
132 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |
|
|
| T |
34263991 |
tcatgggatgaaataatagaaaaaagtttatcaaattttggttggatggatttctttcaagctgttcttgtagcatttgctatgttctttgatgcacaac |
34263892 |
T |
|
| Q |
133 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
232 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
34263891 |
agtcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgtacttcgtcctctgatatttgcaaact |
34263792 |
T |
|
| Q |
233 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaa |
332 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34263791 |
ctcaagatcttcttggtcttgggacacacacccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcacaggtttaccacaa |
34263692 |
T |
|
| Q |
333 |
tcttctttcttcacaggtt |
351 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
34263691 |
tcttctttcttcataggtt |
34263673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 132 - 349
Target Start/End: Complemental strand, 35622810 - 35622593
Alignment:
| Q |
132 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622810 |
caatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaac |
35622711 |
T |
|
| Q |
232 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35622710 |
tcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccaca |
35622611 |
T |
|
| Q |
332 |
atcttctttcttcacagg |
349 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35622610 |
atcttctttcttcacagg |
35622593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 35623114 - 35622991
Alignment:
| Q |
17 |
aaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35623114 |
aaataaaccaaggttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatg |
35623015 |
T |
|
| Q |
117 |
ttctttgatgcacaacaatcattc |
140 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35623014 |
ttctttgatgcacaacaatcattc |
35622991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 343
Target Start/End: Original strand, 14542819 - 14543117
Alignment:
| Q |
33 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
14542819 |
tcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaac |
14542918 |
T |
|
| Q |
133 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
14542919 |
aatcattcataagcatttacactgataattacccaaaatggcactg------------cacaaattcaatatgcacttcatcctctgatatatgcaaact |
14543006 |
T |
|
| Q |
233 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaa |
332 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14543007 |
cccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaa |
14543106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 33 - 343
Target Start/End: Complemental strand, 14580768 - 14580470
Alignment:
| Q |
33 |
tcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgcacaac |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
14580768 |
tcatgggatgtaattatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgttgcagttgcaatgttctttgatgcacaac |
14580669 |
T |
|
| Q |
133 |
aatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgcaaact |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
14580668 |
aatcattcataagcatttacactgataattacccaaaatggcactgca------------caaattcaatatgcacttcatcctctgatatatgcaaact |
14580581 |
T |
|
| Q |
233 |
cccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaa |
332 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14580580 |
cccaagatcttcttggtcttgggacacacatccttcaaacacaatcatttctcattggaatcttgaatgtgctagcacattcatcactggtttaccacaa |
14580481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 37599763 - 37600048
Alignment:
| Q |
29 |
gttatcatgggatgtaatcatagaaaaaagtttatcaaattttgggtggatggatttcttacaagctgttcttgtagcaatagcaatgttctttgatgca |
128 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||| || |||||||| || |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
37599763 |
gttatcatgggatgaaattatagaaatttttttatcaaattttggttgaatggatttatttcaagctgttcttgtagcaattgctatgttctttgatgca |
37599862 |
T |
|
| Q |
129 |
caacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctgatatttgca |
228 |
Q |
| |
|
||| | ||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
37599863 |
caagagtcatttataagcatttacactgataattacccaaaatggcattgcatagacacaaacacaaattcatcatgtactccatcctctgatatttgca |
37599962 |
T |
|
| Q |
229 |
aactcccaagatcctcttggtcttgggacacacactcttcaaacacaatcatttcttattggaatcttgaatgtgctagcacattc |
314 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| || ||||||| |
|
|
| T |
37599963 |
aactctagagatcttcttggtcttgggacacacacccttcaaacacaatcatttctaactggaatcttgaatgtgttaacacattc |
37600048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 37605482 - 37605591
Alignment:
| Q |
120 |
tttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcacaaacacaaacacaaattcatcatgttcttcatcctctg |
219 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
|
|
| T |
37605482 |
tttgatgcacaacaatcattcacaggcatttaccttgataattacccaaaatggcactgcacaaacac--acacaaattcatcatgcactccatcctctg |
37605579 |
T |
|
| Q |
220 |
atatttgcaaac |
231 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37605580 |
atatttgcaaac |
37605591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 10403887 - 10403972
Alignment:
| Q |
97 |
ttcttgtagcaatagcaatgttctttgatgcacaacaatcattcataagcatttacactgataattacccaaaatggcactgcaca |
182 |
Q |
| |
|
|||||||| || | ||||||||||| || ||||||||||||||||||| |||||||| || ||||||||| |||||| |||||| |
|
|
| T |
10403887 |
ttcttgtatcattcgcaatgttcttcgacgcacaacaatcattcataacaatttacaccgacgattacccaacatggcattgcaca |
10403972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 10404054 - 10404132
Alignment:
| Q |
273 |
acaatcatttcttattggaatcttgaatgtgctagcacattcgtcataggtttaccacaatcttctttcttcacaggtt |
351 |
Q |
| |
|
|||||||| ||| | |||| |||||||||||| || | ||| ||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
10404054 |
acaatcatatctcaatggagtcttgaatgtgcaagtagcttcatcacaggtttaccacaatcttcattcttcataggtt |
10404132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University