View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7057_high_3 (Length: 350)
Name: NF7057_high_3
Description: NF7057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7057_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 49110381 - 49110684
Alignment:
| Q |
7 |
tttggtgtttatggcgccgtcgtaatgataaagtatgggacgatgaattaaggcccaatcaatatagcggtccagcttgcaggtgaagcgcttttccaat |
106 |
Q |
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| T |
49110381 |
tttggtgtttatggccccgtcgtaatgacaaagtatgggacgatgaattaaggcc-aatcaatatagcggtccagcttgcacgtgaagcgcttttccaat |
49110479 |
T |
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| Q |
107 |
caagttaatttgttgacatctcatctttgttacataataccatttgctccacatcattcatttttccaatgtggcactctctatatgtaactgatattac |
206 |
Q |
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| T |
49110480 |
caagttaatttgttgacatctcatctttgttacataataccatttgctccacatcattcatttttccaatgtggcactctctatatgtaactgatattgc |
49110579 |
T |
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| Q |
207 |
agcatgcatcaacgtcatttaagtttaccagcacacaaatcaataaccaagcatattcatttaattatccaacctataagcagtaatccatagacacgcc |
306 |
Q |
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| T |
49110580 |
a----gcatcaacgtcatttaagtttaccagcacaccaatcaataaccaagcatattcatttaattatccaacctataagcagtaatccatggacacacc |
49110675 |
T |
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| Q |
307 |
actgcaatg |
315 |
Q |
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| T |
49110676 |
actgcaatg |
49110684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 42414767 - 42414865
Alignment:
| Q |
7 |
tttggtgtttatggcgccgtcgtaatgataaagtatgggacgatgaattaaggcccaatcaatatagcggtccagcttgcaggtgaagcgcttttccaat |
106 |
Q |
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| T |
42414767 |
tttggtgcctatggcgtcgtcggaatgacaaagtatgggacggtgaattaaag-ccaatcaacatagcgatacaacttgctcgcgaggcgcttttccaat |
42414865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 24624779 - 24624731
Alignment:
| Q |
138 |
acataataccatttgctccacatcattcatttttccaatgtggcactct |
186 |
Q |
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| T |
24624779 |
acataataccatttgtgctacatcattcatttttcttatgtggcactct |
24624731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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