View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7057_low_1 (Length: 499)
Name: NF7057_low_1
Description: NF7057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7057_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 39628517 - 39628265
Alignment:
| Q |
13 |
attaataacatcgttcataaacggtgattcaattgaagattgggtaaagattggttaatttttgaaagattcaaatatgagacgtaaatagagcacattt |
112 |
Q |
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| T |
39628517 |
attaataacatcgttcataaacagtgattcaattgaagattggataaagattggttaatttttgaaagattcaaacatgagacgtaaatagagcacattt |
39628418 |
T |
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| Q |
113 |
taggttcaagccataaccatcaaatcaactcgggttaagattgtagacgtggtagattttttaattatttttcgaatggaacattgtagtaaacttgata |
212 |
Q |
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| T |
39628417 |
taggttcaagccataaccatcaaatcaactcgggttaagattgtagacgtggtagattttttaattatttttcgaatggaacattgtagtaaacttgata |
39628318 |
T |
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| Q |
213 |
atccaacttcttaatttactatttcaactttcaacgataatttttaatacaga |
265 |
Q |
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| T |
39628317 |
atccaacttcttaatttactatttcaactttcaacaataatttttaatacaga |
39628265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 39628163 - 39628057
Alignment:
| Q |
383 |
gtattcgaattcagacctctaagcatagacgatttgacaatgagttggagagaagaaaggaaatcgtgtgtggccacatctattgcttacaaattttgtt |
482 |
Q |
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| T |
39628163 |
gtattcgaattcagacccctaagcatagacgatttgacattgagttggagagaagaaaggaaatcgtgtgtggccacatctattgcttacaaattttgtt |
39628064 |
T |
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| Q |
483 |
catctca |
489 |
Q |
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| T |
39628063 |
catctca |
39628057 |
T |
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