View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7058_low_2 (Length: 393)
Name: NF7058_low_2
Description: NF7058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7058_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 5774976 - 5775350
Alignment:
| Q |
1 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774976 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacacatgaaaaacttccaaatgaaatttggagg |
5775075 |
T |
|
| Q |
101 |
cgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgatgatggccctgtagacattctccgagttcatgcgtttggtgtaagtcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || ||| ||| || |||||||||||||| |
|
|
| T |
5775076 |
cgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgacgatggctctgtagacattgtcggaggacatacgattggtgtaagtcct |
5775175 |
T |
|
| Q |
201 |
gaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctc |
300 |
Q |
| |
|
|||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5775176 |
taaggtgtggacgtcaaccttatcattctcaggaaagaacacataaatctggtcagagggattgtcttttttggctttcttgatgacaaggtcttctctc |
5775275 |
T |
|
| Q |
301 |
ttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaattc |
375 |
Q |
| |
|
|||| || ||| |||||| ||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
5775276 |
ttcaagttctcaccatatgtctccttgaactcttgttttgacatacaaacctcgaaatctcctacgaggtaattc |
5775350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 73 - 375
Target Start/End: Original strand, 5774670 - 5774975
Alignment:
| Q |
73 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaa---gtcccgtgccgctttagtaaggctggtctggcaaacgatgatggccctgtagacat |
169 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774670 |
tgaaaaacttccaaatgaaatttggagtcgaactgagagatactgttccatgccatgttagtaaggctggtctggcaaacgatgatggccctgtagacat |
5774769 |
T |
|
| Q |
170 |
tctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcttt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5774770 |
tctccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtcctt |
5774869 |
T |
|
| Q |
270 |
tttggctttcttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgagg |
369 |
Q |
| |
|
||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5774870 |
tttcgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgagg |
5774969 |
T |
|
| Q |
370 |
taattc |
375 |
Q |
| |
|
|||||| |
|
|
| T |
5774970 |
taattc |
5774975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 73 - 375
Target Start/End: Original strand, 5768399 - 5768695
Alignment:
| Q |
73 |
tgaaaaacttccaaatgaaatttggaggcgatttcagagaagtcccgtgccgctttagtaaggctggtctggcaaacgatgatggccctgtagacattct |
172 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5768399 |
tgaaaaacttccaaatgaaatttggagtcgatttcagaga------gtgccatgttagtaaggctggtctggcaaacgatgatggctctgtagacattct |
5768492 |
T |
|
| Q |
173 |
ccgagttcatgcgtttggtgtaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtctttttt |
272 |
Q |
| |
|
| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5768493 |
cggagttcatacgtttggtgcaagtcctgaaggtgtggacgccaaccttctcatcctccgggaagaagacataaatctggtcagagggattgtccttttt |
5768592 |
T |
|
| Q |
273 |
ggctttcttgatgacaaggtcttctctcttcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaa |
372 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768593 |
cgccttgttgatgacaaggtcttctctattcatgtgctccccatatttctccttgaactcttctttcgacatgttaacctcaaaatctcctacgaggtaa |
5768692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5768696 - 5768766
Alignment:
| Q |
1 |
ctatccctaagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
71 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5768696 |
ctatctctaagcatctccatcaccgtcttccggatcctatacagcttagatatttcatcctccgaaaacac |
5768766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 5775359 - 5775421
Alignment:
| Q |
9 |
aagcatctccatcaccgtcttccggatcctatacagcttcgatatttcatcctccgaaaacac |
71 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5775359 |
aagcatctccatcaccttcttccggatcctatacagctttgatatttcatcctccgaaaacac |
5775421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University