View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7058_low_3 (Length: 369)
Name: NF7058_low_3
Description: NF7058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7058_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 75 - 356
Target Start/End: Complemental strand, 1852081 - 1851786
Alignment:
| Q |
75 |
taagattttgaagtgtgaagattctaccaccatctgtcagtaacatcatcatgcaaaataatagagttcaaacaagcactacattccctcaggtgctcct |
174 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
1852081 |
taagattttgaagtgtgaagattctaccgccacctgtcagtaacatcatcatgcaaaataatagagttcaaacaagcactacattccctcagctgatcct |
1851982 |
T |
|
| Q |
175 |
cctcccatgccatcttgttaacataaagctcaaaagacgtctgaacctaacttttaaagttacattctccattcacgagtcccaccaaaataaaaagaaa |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1851981 |
cctcccatgccatcttgttaacataaagctcaaaagacgtctgaacctaacttttaaagttacattctccattcacgagtcccaccaaaataaaaaggaa |
1851882 |
T |
|
| Q |
275 |
ttaccatcaccc-------------aagtatcgtcaatgc-aactacctacagttgtaccaacactacaaccattacttactaaagtacaccacca |
356 |
Q |
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| T |
1851881 |
ttaccatcacccaccttgcacatataagtatcatcaatgcaaactacctacagttgtaccaacactacaaccattacttactaaagtacaccacca |
1851786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 34384260 - 34384406
Alignment:
| Q |
35 |
agaagtttgttgaagaaaattatatgcactgtttatggtataagattttgaagtgtgaagattctaccaccatctgtcagtaacatcatcatgcaaaata |
134 |
Q |
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| T |
34384260 |
agaagtttgttgaacaaaattataagcattgctgacggtgtaagattttgaagtgtgaaaattccactgccacctgccagtaacatcatttggcaaaata |
34384359 |
T |
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| Q |
135 |
atagagttcaaacaagcactacattccctcaggtgctcctcctccca |
181 |
Q |
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| T |
34384360 |
atagagttcaaacaaacaatacactccctcaggtactcctcctccca |
34384406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 21081372 - 21081226
Alignment:
| Q |
19 |
cattgatatgttgagaagaagtttgttgaagaaaattatatgcactgtttatggtataagattttgaagtgtgaagattctaccaccatctgtcagtaac |
118 |
Q |
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||||||||| ||| |||||||||||||||||||||||||| ||| |||| | ||| ||||||| || |||||| | |||| ||| |||||||| ||||| |
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| T |
21081372 |
cattgatatattgggaagaagtttgttgaagaaaattataagcattgttgacggtgtaagattctgtagtgtggacattccaccgccatctgtttgtaac |
21081273 |
T |
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| Q |
119 |
atcatcatgcaaaataatagagttcaaacaagcactacattccctca |
165 |
Q |
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| T |
21081272 |
atcatcctgcaaaataatagaattcaaacaagtactacactccctca |
21081226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 45091992 - 45091826
Alignment:
| Q |
18 |
acattgatatgttgagaagaagtttgttgaagaaaattatatgcactgtttatggtataagattttgaagtgtgaagattctaccaccatctgtcagtaa |
117 |
Q |
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||||||| ||| |||| ||||| |||||| || | ||| | |||||||| | ||| |||||||||||||||||||||||| ||| || ||||||||| |
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| T |
45091992 |
acattgacatggtgagtagaaggttgttggagtagattgcaggcactgttgacggtgtaagattttgaagtgtgaagattccaccgtcacatgtcagtaa |
45091893 |
T |
|
| Q |
118 |
catcatcatgcaaaataatagagttcaaacaagcactacattccctcaggtgctcctcctcccatgc |
184 |
Q |
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| T |
45091892 |
tatcatcctgcaaaataattgaattcaaacatgcactacactccctcagctgctcctcctcccatgc |
45091826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 29537457 - 29537587
Alignment:
| Q |
19 |
cattgatatgttgagaagaagtttgttgaagaaaattatatgcactgtttatggtataagattttgaagtgtgaagattctaccaccatctgtcagtaac |
118 |
Q |
| |
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| T |
29537457 |
cattgataagtttagtagaagtttattgaagaaaattataagcactgctaatagtgta-----ttgaagtgtaaagattccactgccacctatcagtaac |
29537551 |
T |
|
| Q |
119 |
atcatcatgcaaaataatagagttcaaacaagcact |
154 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||| |
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| T |
29537552 |
aacatcctgcaaaataatagagttcaaacaagcact |
29537587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 19104370 - 19104414
Alignment:
| Q |
19 |
cattgatatgttgagaagaagtttgttgaagaaaattatatgcac |
63 |
Q |
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| T |
19104370 |
cattgatatgttgataagaagtttgatgaagaaaattataagcac |
19104414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 45091631 - 45091579
Alignment:
| Q |
290 |
tatcgtcaatgcaactacctacagttgtaccaacactacaaccattacttact |
342 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||| || |||||| ||||| |
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| T |
45091631 |
tatcgtcaatccaactccctacagttgtaccaacacctcagccattaattact |
45091579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 3765888 - 3765822
Alignment:
| Q |
115 |
taacatcatcatgcaaaataatagagttcaaacaagcactacattccctcaggtgctcctcctccca |
181 |
Q |
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|||||||||| |||||||||||||| || || |||| |||| |||||||| |||||||||||||| |
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| T |
3765888 |
taacatcatcctgcaaaataatagaatttaacatagcattacactccctcagttgctcctcctccca |
3765822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 24448772 - 24448829
Alignment:
| Q |
118 |
catcatcatgcaaaataatagagttcaaacaagcactacattccctcaggtgctcctc |
175 |
Q |
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||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||| |
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| T |
24448772 |
catcatcttgcaaaataatagaattcaacatagcactacactccctcagatgctcctc |
24448829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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