View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7058_low_4 (Length: 333)

Name: NF7058_low_4
Description: NF7058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7058_low_4
NF7058_low_4
[»] chr7 (12 HSPs)
chr7 (125-325)||(32859233-32859439)
chr7 (157-266)||(7677710-7677819)
chr7 (157-266)||(4261243-4261353)
chr7 (157-266)||(38072191-38072301)
chr7 (156-325)||(38071935-38072117)
chr7 (161-325)||(668932-669109)
chr7 (157-325)||(4261427-4261606)
chr7 (157-274)||(37864198-37864317)
chr7 (272-325)||(668345-668398)
chr7 (157-232)||(38779498-38779573)
chr7 (272-325)||(7677583-7677636)
chr7 (157-274)||(17145660-17145780)
[»] chr1 (24 HSPs)
chr1 (118-325)||(17050447-17050659)
chr1 (125-321)||(12925873-12926075)
chr1 (161-315)||(20794331-20794485)
chr1 (125-256)||(31390734-31390871)
chr1 (158-267)||(47334238-47334348)
chr1 (123-218)||(40649516-40649618)
chr1 (122-233)||(46133689-46133807)
chr1 (156-325)||(16270978-16271159)
chr1 (158-274)||(23440656-23440773)
chr1 (272-325)||(38930478-38930531)
chr1 (157-256)||(6076012-6076111)
chr1 (158-325)||(6076697-6076876)
chr1 (272-325)||(16270374-16270427)
chr1 (272-325)||(38931075-38931128)
chr1 (272-325)||(51975056-51975109)
chr1 (157-314)||(193888-194047)
chr1 (157-274)||(9948033-9948152)
chr1 (272-314)||(9948742-9948784)
chr1 (272-314)||(51974603-51974645)
chr1 (272-325)||(48971871-48971924)
chr1 (157-274)||(48972336-48972455)
chr1 (157-246)||(9948807-9948897)
chr1 (272-325)||(48972274-48972327)
chr1 (157-221)||(50827037-50827101)
[»] chr3 (21 HSPs)
chr3 (158-325)||(45500512-45500683)
chr3 (163-256)||(8436575-8436668)
chr3 (126-256)||(8440120-8440256)
chr3 (157-266)||(36750083-36750193)
chr3 (156-325)||(41756261-41756443)
chr3 (157-325)||(38922781-38922962)
chr3 (157-266)||(52492179-52492289)
chr3 (158-314)||(3971745-3971911)
chr3 (158-314)||(3997967-3998133)
chr3 (156-325)||(45242103-45242285)
chr3 (157-325)||(38923494-38923675)
chr3 (157-325)||(44686292-44686473)
chr3 (157-325)||(36750267-36750447)
chr3 (157-325)||(45242816-45242997)
chr3 (272-325)||(52492052-52492105)
chr3 (157-314)||(44687003-44687173)
chr3 (275-314)||(45501136-45501175)
chr3 (272-314)||(41755665-41755707)
chr3 (272-325)||(3971158-3971211)
chr3 (272-325)||(3998670-3998723)
chr3 (157-221)||(19132758-19132822)
[»] scaffold0041 (2 HSPs)
scaffold0041 (156-266)||(27258-27368)
scaffold0041 (272-325)||(27442-27495)
[»] chr8 (11 HSPs)
chr8 (161-266)||(5035177-5035282)
chr8 (157-325)||(32536746-32536924)
chr8 (157-325)||(37639749-37639930)
chr8 (272-325)||(32537317-32537370)
chr8 (272-323)||(38023790-38023841)
chr8 (272-314)||(41859476-41859518)
chr8 (272-314)||(41859936-41859978)
chr8 (272-325)||(38024360-38024413)
chr8 (272-324)||(37640427-37640479)
chr8 (157-274)||(34992155-34992274)
chr8 (216-256)||(10501824-10501864)
[»] chr5 (9 HSPs)
chr5 (157-266)||(33001970-33002079)
chr5 (157-325)||(33002645-33002826)
chr5 (156-325)||(15183126-15183308)
chr5 (157-314)||(15183857-15184027)
chr5 (178-256)||(42518811-42518890)
chr5 (272-314)||(686582-686624)
chr5 (272-314)||(687188-687230)
chr5 (157-256)||(8204158-8204259)
chr5 (157-246)||(12190078-12190168)
[»] chr4 (28 HSPs)
chr4 (157-273)||(36451320-36451437)
chr4 (162-274)||(17648036-17648149)
chr4 (157-266)||(39523172-39523281)
chr4 (157-314)||(45230403-45230573)
chr4 (157-325)||(29651161-29651342)
chr4 (272-325)||(26610512-26610565)
chr4 (157-325)||(36865547-36865727)
chr4 (157-325)||(26611112-26611293)
chr4 (157-239)||(11806129-11806211)
chr4 (272-325)||(10424289-10424342)
chr4 (272-325)||(21165613-21165666)
chr4 (156-314)||(21166215-21166386)
chr4 (272-325)||(31836288-31836341)
chr4 (158-236)||(9939161-9939240)
chr4 (157-274)||(11417725-11417844)
chr4 (159-325)||(29650455-29650633)
chr4 (157-325)||(39522413-39522594)
chr4 (272-325)||(10424888-10424941)
chr4 (276-325)||(45235789-45235838)
chr4 (272-315)||(36864981-36865024)
chr4 (272-314)||(31835314-31835356)
chr4 (157-256)||(36450766-36450867)
chr4 (157-267)||(10424957-10425069)
chr4 (157-236)||(11417867-11417947)
chr4 (224-256)||(23383415-23383447)
chr4 (157-236)||(36864855-36864935)
chr4 (157-267)||(38143635-38143747)
chr4 (157-236)||(38694740-38694820)
[»] chr2 (5 HSPs)
chr2 (157-325)||(21471783-21471964)
chr2 (272-325)||(21471183-21471236)
chr2 (272-328)||(37548166-37548222)
chr2 (157-280)||(4479590-4479712)
chr2 (160-274)||(38834428-38834544)
[»] scaffold0700 (1 HSPs)
scaffold0700 (125-256)||(5319-5456)
[»] chr6 (13 HSPs)
chr6 (157-325)||(15083147-15083328)
chr6 (157-325)||(22579973-22580154)
chr6 (272-325)||(22580653-22580706)
chr6 (272-325)||(22587139-22587192)
chr6 (272-325)||(33479863-33479916)
chr6 (156-325)||(15082434-15082616)
chr6 (156-274)||(33018204-33018324)
chr6 (157-314)||(33480468-33480638)
chr6 (157-274)||(3542852-3542971)
chr6 (272-325)||(1034970-1035023)
chr6 (157-257)||(7193376-7193475)
chr6 (272-314)||(9427876-9427918)
chr6 (157-236)||(3542993-3543073)
[»] scaffold0311 (1 HSPs)
scaffold0311 (157-312)||(1-170)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 125 - 325
Target Start/End: Original strand, 32859233 - 32859439
Alignment:
Q  125 ggtggcatttagcatgggtcaacggagttttt------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctc 218  Q
    ||||||||||||||||||||| ||||||||||      || ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||    
T  32859233 ggtggcatttagcatgggtcagcggagttttttttcatcacgggaaagttgatagtatgcattagattaaatgtggaacacattcttatactactctctc 32859332  T
Q  219 aacattagattattttttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgc 318  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  32859333 aacattaaattattttttacactatcttccaccctctcactttcatgtccccacaccatcaccaaatcacatattcagcaaccactttgaccaccatcgc 32859432  T
Q  319 accacca 325  Q
    |||||||    
T  32859433 accacca 32859439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 7677819 - 7677710
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    ||||||||||||||| || | |||||||||||||| | |||||||||||||  || | |||||||| || ||||||||||||| ||||||||||||||||    
T  7677819 catgggaaagttgatcatgttcattagattaaatgaggaacacattcttatcatattctctcaacactaaattattttttacaatatcttccaccctctc 7677720  T
Q  257 actatcatgt 266  Q
     || ||||||    
T  7677719 tctttcatgt 7677710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 4261243 - 4261353
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctct 255  Q
    ||||||||||||||| || | |||||||||||||| | || ||||||||||  |||| ||||||| | |||||||||||||||||||||||||| |||||    
T  4261243 catgggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaacctct 4261342  T
Q  256 cactatcatgt 266  Q
    | || ||||||    
T  4261343 ctctttcatgt 4261353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 38072301 - 38072191
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctct 255  Q
    ||||||||||||||| || | ||||||||||||||   || ||||||||||  |||| ||||||| | ||||||||||||||||||||||||||||||||    
T  38072301 catgggaaagttgatcatgtccattagattaaatgatgaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctct 38072202  T
Q  256 cactatcatgt 266  Q
    | || ||||||    
T  38072201 ctctttcatgt 38072191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 38071935 - 38072117
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| ||    
T  38071935 tcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacact 38072034  T
Q  254 ctcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    ||| || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  38072035 ctctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 38072117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 161 - 325
Target Start/End: Complemental strand, 669109 - 668932
Alignment:
Q  161 ggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctctcac 258  Q
    ||||||||||| |||| |||||||| ||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| ||||| |    
T  669109 ggaaagttgatcatatccattagatcaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctctc 669010  T
Q  259 tatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    | ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  669009 tttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccacca 668932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 4261606 - 4261427
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||  |||  |||| |||||| |||||||||| ||||||| |||||||| ||| |||    
T  4261606 catgggaaagttgatcatctccattagattaaatgaggaacatatttctatcatactctctcaaccattagattatttttttatactatctttcacactc 4261507  T
Q  255 tcactatcatgtctccaca---------ccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| |||||         |||||||||||||||| |||||  || ||||||||||||||  |||||||||    
T  4261506 tctctttcatgtccccacacccatacatccaccactaaatcacaaattcaagaatcactttgaccaccactgcaccacca 4261427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 37864317 - 37864198
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| |||||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  37864317 catgggaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 37864218  T
Q  255 tcactatcatgtctccacac 274  Q
    || || ||||||| ||||||    
T  37864217 tctctttcatgtccccacac 37864198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 668345 - 668398
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  668345 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 668398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 38779573 - 38779498
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattatt 232  Q
    ||||||||||||||| || | |||||||||||||| | || | ||||||||| |||| |||||||| |||||||||    
T  38779573 catgggaaagttgatcatgtccattagattaaatgaggaatatattcttataatactctctcaacactagattatt 38779498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 7677583 - 7677636
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||  |||||||||    
T  7677583 caccaccactaaatcacaaattcaacaatcactttgaccaccactgcaccacca 7677636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 17145660 - 17145780
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta--ttttttacactatcttccaccct 253  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||  ||||||| |||||||| ||| ||    
T  17145660 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 17145759  T
Q  254 ctcactatcatgtctccacac 274  Q
    ||| || ||||||| ||||||    
T  17145760 ctctctttcatgtccccacac 17145780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 118 - 325
Target Start/End: Original strand, 17050447 - 17050659
Alignment:
Q  118 ataataaggtggcatttagcatgggtcaacggagttttt-----catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactac 212  Q
    ||||| |||||||||||||||| |||||  |||||||||     |||||||||||||||||| | ||||||||||||| ||  |||||||||||||||||    
T  17050447 ataatcaggtggcatttagcataggtcagtggagtttttttcaccatgggaaagttgataatgttcattagattaaatatggtacacattcttatactac 17050546  T
Q  213 tatctcaacattagattattttttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccac 312  Q
    | |||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  17050547 tctctcaatattagattattttttacactatcttccaccctctctctttcatgtccccacaccaccaccaaatcacatattcagcaaccactttgaccac 17050646  T
Q  313 catcgcaccacca 325  Q
    |||||||||||||    
T  17050647 catcgcaccacca 17050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 125 - 321
Target Start/End: Original strand, 12925873 - 12926075
Alignment:
Q  125 ggtggcatttagcatgggtcaacggagttttt------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctc 218  Q
    ||||||||||||||| |||||  |||||||||      ||| | |||||||||||| | |||||||||||||||| || |||||||||||||||| ||||    
T  12925873 ggtggcatttagcattggtcagtggagtttttttccaccatagaaaagttgataatgtccattagattaaatgtggaatacattcttatactactctctc 12925972  T
Q  219 aacattagattattttttacactatcttccaccctctcactatcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgc 318  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  12925973 aacattagattattttttacactatcttccaccctctctctttcatgtccccacaccaccaccaaatcacatattcagcaaccactttgaccaacatcgc 12926072  T
Q  319 acc 321  Q
    |||    
T  12926073 acc 12926075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 20794331 - 20794485
Alignment:
Q  161 ggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctcacta 260  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||| ||     
T  20794331 ggaaagttgataatgtgcattagattaaatgtggaacacattcttatatcactctctcaacattagattattttttacactattttccaccctctctctt 20794430  T
Q  261 tcatgtctccacaccaccactaaatcacatattcagcaaccactttgaccaccat 315  Q
    ||||||| |||||||||||  |||||||||||| |||||||||||||||||||||    
T  20794431 tcatgtccccacaccaccataaaatcacatatttagcaaccactttgaccaccat 20794485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 256
Target Start/End: Complemental strand, 31390871 - 31390734
Alignment:
Q  125 ggtggcatttagcatgggtcaacggagttttt------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctc 218  Q
    |||||||||||||||||||||| |||||| ||      ||||||||||||||| || | |||| || |||||| | |||||||| |||| ||||| ||||    
T  31390871 ggtggcatttagcatgggtcaatggagttctttcccaccatgggaaagttgattatgtccattggaataaatgaggaacacatttttatcctactctctc 31390772  T
Q  219 aacattagattattttttacactatcttccaccctctc 256  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  31390771 aacattagattattttttacactatctttcactctctc 31390734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 47334238 - 47334348
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattatt-ttttacactatcttccaccctctc 256  Q
    |||||||||||||| || | |||||||||||||| |||||| || ||||| ||||| |||||||| ||||||||| ||||||||||||||||||| ||||    
T  47334238 atgggaaagttgattatgtccattagattaaatgagaaacaaatccttatcctactctctcaacactagattattgttttacactatcttccaccatctc 47334337  T
Q  257 actatcatgtc 267  Q
     || |||||||    
T  47334338 tctttcatgtc 47334348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 40649618 - 40649516
Alignment:
Q  123 aaggtggcatttagcatgggtcaacggagttttt-------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactat 215  Q
    ||||||||||||||||||||| |  |||||||||       |||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| |    
T  40649618 aaggtggcatttagcatgggttagtggagtttttttttcaccatgggaaagttgataatgtccattagattaaatgtggaacacattcttatactactct 40649519  T
Q  216 ctc 218  Q
    |||    
T  40649518 ctc 40649516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 46133689 - 46133807
Alignment:
Q  122 taaggtggcatttagcatgggtcaacggagttttt-------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactacta 214  Q
    ||||||||||||||||||||||||  |||||||||       |||||||||||  || || | ||| |||||||||| | | |||||||||||||||||     
T  46133689 taaggtggcatttagcatgggtcactggagttttttccccaccatgggaaagtgaattatgtccatcagattaaatgaggagcacattcttatactactc 46133788  T
Q  215 tctcaacattagattattt 233  Q
    |||||||||||||||||||    
T  46133789 tctcaacattagattattt 46133807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 16271159 - 16270978
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | ||||| || ||| ||    
T  16271159 tcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatatttcacact 16271060  T
Q  254 ctcactatcatgtctccacac----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    ||| || ||||||| ||||||          ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  16271059 ctctctttcatgtccccacacaccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 16270978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 23440656 - 23440773
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctctc 256  Q
    |||| ||||||||| || | |||||||||||||| |||||| |||| |||  |||| ||||||| | |||||||||||||| |||||||| ||| |||||    
T  23440656 atggaaaagttgattatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattattttttatactatctttcacactctc 23440755  T
Q  257 actatcatgtctccacac 274  Q
     || ||||||| ||||||    
T  23440756 tctttcatgtccccacac 23440773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 38930478 - 38930531
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  38930478 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccacca 38930531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 6076012 - 6076111
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    |||| |||||||||| || | |||||||||||||| | || ||||| ||||  || | |||||||| || |||||||||||||||||||||||| |||||    
T  6076012 catgagaaagttgatcatgtccattagattaaatgaggaatacatttttatcatagtctctcaacactaaattattttttacactatcttccactctctc 6076111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 325
Target Start/End: Complemental strand, 6076876 - 6076697
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctctc 256  Q
    |||| ||||||||| || | ||||| |||||||| | |||| |||| |||  |||| ||||||| | |||||||||||||| |||||||| ||| |||||    
T  6076876 atggaaaagttgatcatgtccattatattaaatgagtaacatattcctatcatactctctcaaccaatagattattttttatactatctttcacactctc 6076777  T
Q  257 actatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
     || ||||||| ||||||           ||||||||||||||| ||||| |||||||||||| |||||  |||||||||    
T  6076776 tctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgatcaccactgcaccacca 6076697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 16270374 - 16270427
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  16270374 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 16270427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 38931128 - 38931075
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  38931128 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 38931075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 51975109 - 51975056
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  51975109 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 51975056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 193888 - 194047
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    |||| ||||||| || || | ||||| |||||||| | |||| ||||||||  |||| |||| ||| |||||||||||||| | |||||| || | ||||    
T  193888 catgagaaagttaatcatgtccattaaattaaatgaggaacatattcttatcatactctctccacactagattattttttatattatctttcatcatctc 193987  T
Q  257 actatcatgtctc-ca-caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
     || ||||||| | || |||||||||||||||||| ||| |||||||  | |||||||||    
T  193988 tctttcatgtcccacaccaccaccactaaatcacaaatttagcaacccttctgaccacca 194047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 9948033 - 9948152
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||| ||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  9948033 catggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 9948132  T
Q  255 tcactatcatgtctccacac 274  Q
    || || ||||||| ||||||    
T  9948133 tctctttcatgtccccacac 9948152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 9948784 - 9948742
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  9948784 caccaccactaaatcacaaattcaacaaccactttgaccacca 9948742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 51974603 - 51974645
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  51974603 caccaccactaaatcacaaattcaacaaccactttgaccacca 51974645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 48971871 - 48971924
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| |||||||||| |||||||  |||||||||    
T  48971871 caccaccactaaatcacaaattcaacaaccactttaaccaccactgcaccacca 48971924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 48972455 - 48972336
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||| ||||||||| || | |||||||||||||| |||||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  48972455 catggaaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 48972356  T
Q  255 tcactatcatgtctccacac 274  Q
    || || |||| || ||||||    
T  48972355 tctctttcatatccccacac 48972336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 9948897 - 9948807
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattattttttacactatctt 246  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| | |||| || |||||||||||||| ||||||||    
T  9948897 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctatcaaccactagattattttttatactatctt 9948807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 48972327 - 48972274
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||  ||||||||||  |||||||||    
T  48972327 caccaccactaaatcacaaattcaacaaccatcttgaccaccactgcaccacca 48972274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 50827101 - 50827037
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac 221  Q
    ||||||||||||||| || | |||||||||||||| |||||| ||| ||||  |||| |||||||    
T  50827101 catgggaaagttgatcatgtccattagattaaatgagaaacatatttttatcatactctctcaac 50827037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 325
Target Start/End: Original strand, 45500512 - 45500683
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctca 257  Q
    |||||||||||||| || | |||||||||||||| | ||||||||||||| ||||| |||||||| ||||||||| |||   |||||||||||||||||     
T  45500512 atgggaaagttgattatgtccattagattaaatgaggaacacattcttattctactctctcaacactagattattgttttatctatcttccaccctctct 45500611  T
Q  258 ctatcatgtc----tccacaccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || |||||||     ||||||||||||||||||| | |||||||||||||| |||||||||  |||||||||    
T  45500612 ctttcatgtccccacccacaccaccactaaatcatagattcagcaaccactctgaccaccactgcaccacca 45500683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 8436668 - 8436575
Alignment:
Q  163 aaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    |||||||||||| |||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  8436668 aaagttgataatgtgcatttgattaaatgtggaacacatttttatactactttctcaacattagattattttttacactatcttccactctctc 8436575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 8440256 - 8440120
Alignment:
Q  126 gtggcatttagcatgggtcaacggagttttt------catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctca 219  Q
    ||||||||||||||||||||  |||||||||      ||||  |||||||||||| |||||| ||||||||||| |||||||| |||||||||| |||||    
T  8440256 gtggcatttagcatgggtcagtggagttttttttcaccatgaaaaagttgataatgtgcatttgattaaatgtggaacacattattatactactctctca 8440157  T
Q  220 acattagattattttttacactatcttccaccctctc 256  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  8440156 acattagattattttttacactatctttcactctctc 8440120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 36750083 - 36750193
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctct 255  Q
    ||||| ||||||||| || | |||||||||||||| | || ||||||||||  |||| ||||||| | ||||||||||||||||||||||||||||||||    
T  36750083 catggaaaagttgatcatgttcattagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctct 36750182  T
Q  256 cactatcatgt 266  Q
    | || ||||||    
T  36750183 ctctttcatgt 36750193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 41756443 - 41756261
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| |||||||||| ||||||| |||||||| ||| ||    
T  41756443 tcatgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctctcaaccattagattatttttttatactatctttcacact 41756344  T
Q  254 ctcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    ||| || ||||||| |||           |||||||||||||||||| ||||| ||||||||||||||||||| |||| ||||    
T  41756343 ctctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccattgcactacca 41756261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 38922781 - 38922962
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| |||||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  38922781 catgggaaagttgatcatatccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38922880  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || |||||||  ||           |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  38922881 tctctttcatgtcctcacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 38922962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 52492289 - 52492179
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctct 255  Q
    ||||| ||||||| | || | |||||||||||||| | || ||||||||||  |||| ||||||| | ||||||||||||||||||||||||||||||||    
T  52492289 catggaaaagttgttcatgtccattagattaaatgaggaatacattcttatcatactctctcaaccactagattattttttacactatcttccaccctct 52492190  T
Q  256 cactatcatgt 266  Q
    | || ||||||    
T  52492189 ctctttcatgt 52492179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 3971911 - 3971745
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctct 255  Q
    |||||||||||||| |||| |||||||||||||| | |||| |||  |||  |||| |||||| || ||||||| ||||||| |||||||| ||| ||||    
T  3971911 atgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactct 3971812  T
Q  256 cactatcatgtctccac--------accaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    | || ||||||| ||||        ||||||||||||||||| ||||| ||||||||||||||||||    
T  3971811 ctctttcatgtccccacacactcataccaccactaaatcacaaattcaacaaccactttgaccacca 3971745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 314
Target Start/End: Original strand, 3997967 - 3998133
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctct 255  Q
    |||||||||||||| |||| |||||||||||||| | |||| |||  |||  |||| |||||| || ||||||| ||||||| |||||||| ||| ||||    
T  3997967 atgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactct 3998066  T
Q  256 cactatcatgtctccac--------accaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    | || ||||||| ||||        ||||||||||||||||| ||||| ||||||||||||||||||    
T  3998067 ctctttcatgtccccacacacccataccaccactaaatcacaaattcaacaaccactttgaccacca 3998133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 45242103 - 45242285
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| ||    
T  45242103 tcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacact 45242202  T
Q  254 ctcactatcatgtctccac-----------accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    ||| || ||||||| ||||           ||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  45242203 ctctctttcatgtccccacacacccatacaaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 45242285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 38923675 - 38923494
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||| |||||||||||| | |||||||||||||| | |||| |||  |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  38923675 catggaaaagttgataatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacactc 38923576  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||||||||||||||||||||||  |||||||||    
T  38923575 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcagcaaccactttgaccaccactgcaccacca 38923494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 44686292 - 44686473
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    |||| |||||||||| || | |||||||||||||| |||||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  44686292 catgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 44686391  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  44686392 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 44686473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 36750447 - 36750267
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattattttttacactatcttccaccctct 255  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||  |||  |||| ||||||| | |||||||||||||| |||||||| ||| ||||    
T  36750447 catgggaaagttgatcatgttcattagattaaatgaggaacatatttctatcatactctctcaaccactagattattttttatactatctttcacactct 36750348  T
Q  256 cactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    | || ||||||| |||           ||||||| |||||||||| ||||| ||||||||||||||||||  |||||||||    
T  36750347 ctctttcatgtccccacacacccataccaccaccgctaaatcacaaattcaacaaccactttgaccaccactgcaccacca 36750267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 45242997 - 45242816
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| ||||  ||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | | |||||| ||| |||    
T  45242997 catgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatattatctttcacactc 45242898  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  45242897 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 45242816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 52492052 - 52492105
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  52492052 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 52492105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 44687173 - 44687003
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||| ||||||||| |||| |||||||||||||| | || | |||| |||  |||| ||||||| ||||||||||||||| | |||||||| ||| |||    
T  44687173 catggaaaagttgatcatattcattagattaaatgaggaaaatattcctatcatactctctcaaccattagattatttttttatactatctttcacactc 44687074  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    || || ||||||| ||            |||||||||||||||||| ||||| ||||||||||||||||||    
T  44687073 tctctttcatgtccccctacactcataccaccaccactaaatcacaaattcaacaaccactttgaccacca 44687003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 45501175 - 45501136
Alignment:
Q  275 caccactaaatcacatattcagcaaccactttgaccacca 314  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  45501175 caccactaaatcatatattcagcaaccactttgaccacca 45501136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 41755665 - 41755707
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  41755665 caccaccactaaatcacaaattcaacaaccactttgaccacca 41755707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 3971158 - 3971211
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  |||||||||    
T  3971158 caccaccagtaaatcacaaattcaacaaccactttgaccaccactgcaccacca 3971211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 3998723 - 3998670
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  |||||||||    
T  3998723 caccaccagtaaatcacaaattcaacaaccactttgaccaccactgcaccacca 3998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 19132822 - 19132758
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac 221  Q
    ||||||||||||||| || | |||||||||||||| | |||| ||||||||  |||| |||||||    
T  19132822 catgggaaagttgatcatgtccattagattaaatgaggaacatattcttatcatactctctcaac 19132758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 27258 - 27368
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctct 255  Q
    |||||||||||||||| || | |||||||||||||| | |||||||||||||  |||| |||||||| || |||||||||||||||||||||||||||||    
T  27258 tcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaacactaaattattttttacactatcttccaccctct 27357  T
Q  256 cactatcatgt 266  Q
    | || ||||||    
T  27358 ctctttcatgt 27368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 27495 - 27442
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  27495 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 27442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 5035282 - 5035177
Alignment:
Q  161 ggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctcacta 260  Q
    ||||||||||| || | |||||||||||||| | || ||||||||||  |||| |||||||| || ||||| |||||||||||||||||||||||| ||     
T  5035282 ggaaagttgatcatgtccattagattaaatgaggaatacattcttatcatactctctcaacactaaattatgttttacactatcttccaccctctctctt 5035183  T
Q  261 tcatgt 266  Q
    ||||||    
T  5035182 tcatgt 5035177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 32536746 - 32536924
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  32536746 catgggaaagttgatcatgtccattagattaaatggggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 32536845  T
Q  255 tcactatcatgtctccacac--------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||        ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  32536846 tctctttcatgtccccacacacccataccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 32536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 37639749 - 37639930
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  37639749 catgggaaagttgatcatattcattagattaaatgaggaacatattcctatgatactctctcaaccactagattatttttttatactatctttcacactc 37639848  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| |||           ||||||||||||||| || ||||| ||||||||||||||||||  |||||||||    
T  37639849 tctctttcatgtccccacacacccataccaccaccactaaatcgcaaattcaacaaccactttgaccaccactgcaccacca 37639930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 32537370 - 32537317
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  32537370 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 32537317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 38023790 - 38023841
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccac 323  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||    
T  38023790 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccac 38023841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 41859476 - 41859518
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  41859476 caccaccactaaatcacaaattcaacaaccactttgaccacca 41859518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 41859978 - 41859936
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  41859978 caccaccactaaatcacaaattcaacaaccactttgaccacca 41859936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 38024413 - 38024360
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||  |||||||||    
T  38024413 caccaccattaaatcacaaattcaacaaccactttgaccaccactgcaccacca 38024360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 37640479 - 37640427
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacc 324  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||  ||||||||    
T  37640479 caccaccactaaatcacaaattcaacaaccaccttgaccaccactgcaccacc 37640427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 34992274 - 34992155
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || || |||| ||||||| |||||||| ||| |||    
T  34992274 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactaaattatttttttatactatctttcacactc 34992175  T
Q  255 tcactatcatgtctccacac 274  Q
    || || ||||||| ||||||    
T  34992174 tctctttcatgtccccacac 34992155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 10501864 - 10501824
Alignment:
Q  216 ctcaacattagattattttttacactatcttccaccctctc 256  Q
    ||||||| ||||||||||||||||||||| || ||||||||    
T  10501864 ctcaacactagattattttttacactatcatcaaccctctc 10501824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 33001970 - 33002079
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    ||||| ||||||||| || | |||||||||||||| | || ||||||||||  || | |||||||| || ||||||||||||||||||||||||||||||    
T  33001970 catggaaaagttgatcatgtccattagattaaatgaggaatacattcttatcatattctctcaacactaaattattttttacactatcttccaccctctc 33002069  T
Q  257 actatcatgt 266  Q
     || ||||||    
T  33002070 tctttcatgt 33002079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 33002826 - 33002645
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  33002826 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 33002727  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| |||           |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  33002726 tctctttcatgtccccaaacactcataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 33002645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 15183126 - 15183308
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccct 253  Q
    ||||| |||||||||| || | |||||||||||||| | |||| |||  |||  |||| ||||||| | ||||||||||||| | |||||||| ||| ||    
T  15183126 tcatgagaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaaccactagattatttttttatactatctttcacact 15183225  T
Q  254 ctcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||| ||||||| ||||||           ||||||||||||||| ||||| |||||| |||||||||||  |||||||||    
T  15183226 ctcactttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccattttgaccaccactgcaccacca 15183308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 15184027 - 15183857
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| |  ||||||| ||| |||    
T  15184027 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatgctatctttcacactc 15183928  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccacca 314  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||    
T  15183927 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccacca 15183857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 42518811 - 42518890
Alignment:
Q  178 cattagattaaatgtgaaacacattcttatactactatctcaacattagattatt-ttttacactatcttccaccctctc 256  Q
    |||||||||||||| |||||| ||||||||  ||||||||||||| || |||||| ||||| ||||| || |||||||||    
T  42518811 cattagattaaatgagaaacaaattcttatcgtactatctcaacactaaattattgttttatactatttttcaccctctc 42518890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 686582 - 686624
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  686582 caccaccactaaatcacaaattcaacaaccactttgaccacca 686624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 687230 - 687188
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  687230 caccaccactaaatcacaaattcaacaaccactttgaccacca 687188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 8204158 - 8204259
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  ||||||||||| || ||||||| ||||||| |||||||| ||| |||    
T  8204158 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactatctcaaccactagattatttttttatactatctttcacactc 8204257  T
Q  255 tc 256  Q
    ||    
T  8204258 tc 8204259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 12190168 - 12190078
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattattttttacactatctt 246  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||  |||  |||| |||||| ||||||||||||||||| | ||||||    
T  12190168 catgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaatcattagattattttttatattatctt 12190078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 273
Target Start/End: Complemental strand, 36451437 - 36451320
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattatt-ttttacactatcttccaccctct 255  Q
    ||||| ||||||||| || | ||||||||||||||  ||||| || ||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||    
T  36451437 catggaaaagttgattatgtccattagattaaatgaaaaacaaatccttatcctactctctcaacactagattattgttttacactatcttccaccatct 36451338  T
Q  256 cactatcatgtctccaca 273  Q
    | || ||||||| |||||    
T  36451337 ctctttcatgtccccaca 36451320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 274
Target Start/End: Complemental strand, 17648149 - 17648036
Alignment:
Q  162 gaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattatt-ttttacactatcttccaccctctcacta 260  Q
    |||||||||| |||| |||||||||||||  |||| | ||||||||  |||| |||||||| || |||||| ||||||||||||||||| |||||| ||     
T  17648149 gaaagttgattatatccattagattaaataagaaataaattcttatcttactctctcaacactatattattgttttacactatcttccatcctctctctt 17648050  T
Q  261 tcatgtctccacac 274  Q
    ||||||| ||||||    
T  17648049 tcatgtccccacac 17648036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 39523281 - 39523172
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    ||||||||||||||| || | |||||||||||||| | || ||||  |||   |||| |||||||| || ||||||||||||||||||||||||||||||    
T  39523281 catgggaaagttgatcatgtccattagattaaatgaggaatacatctttaccatactctctcaacactaaattattttttacactatcttccaccctctc 39523182  T
Q  257 actatcatgt 266  Q
     || ||||||    
T  39523181 tctttcatgt 39523172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 314
Target Start/End: Original strand, 45230403 - 45230573
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  45230403 catgggaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 45230502  T
Q  255 tcactatcatgtctccac-----------accaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    || || ||||||| ||||           ||||||||||||||||| ||||| ||||||||||||||||||    
T  45230503 tctctttcatgtccccacacacccatacgaccaccactaaatcacaaattcaacaaccactttgaccacca 45230573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 29651342 - 29651161
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| ||||  ||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  29651342 catgggaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 29651243  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  29651242 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 29651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 26610512 - 26610565
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  26610512 caccaccactaaatcacaaattcaacaaccactttgaccaccattgcaccacca 26610565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 36865727 - 36865547
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| ||||||||  || |||    
T  36865727 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactc 36865628  T
Q  255 tcactatcatgtctcca----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| |||          |||||| ||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  36865627 tctctttcatgtccccacacaccataccaccacaactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 36865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 26611293 - 26611112
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | ||||||||  || |||    
T  26611293 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatcttttacactc 26611194  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  26611193 tctctttcatgtccccacacactcataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 26611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 11806129 - 11806211
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttaca 239  Q
    |||||||||||| || || | |||||||||||||| | |||||||| |||| ||||| |||||||| ||| ||||||||||||    
T  11806129 catgggaaagttaatcatgtccattagattaaatgaggaacacatttttatcctactctctcaacactagtttattttttaca 11806211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 10424289 - 10424342
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  10424289 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 10424342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 21165613 - 21165666
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  21165613 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 21165666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 21166386 - 21166215
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| ||    
T  21166386 tcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacact 21166287  T
Q  254 ctcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    ||| || ||||||| |||           |||||| ||||||||||| ||||| ||||||||||||||||||    
T  21166286 ctctctttcatgtccccacacacccataccaccactactaaatcacaaattcaacaaccactttgaccacca 21166215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 31836341 - 31836288
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  31836341 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 31836288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 9939161 - 9939240
Alignment:
Q  158 atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattatttttt 236  Q
    |||||||||||||| || | |||||||||||||| |||||| ||||||||  |||| |||||| || |||||||||||||    
T  9939161 atgggaaagttgatcatgtccattagattaaatgagaaacatattcttatcatactctctcaaccactagattatttttt 9939240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 11417725 - 11417844
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattat-tttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||| |||||| |||||||| ||| |||    
T  11417725 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatatttttatactatctttcacactc 11417824  T
Q  255 tcactatcatgtctccacac 274  Q
    || || ||||||| ||||||    
T  11417825 tctctttcatgtccccacac 11417844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 325
Target Start/End: Original strand, 29650455 - 29650633
Alignment:
Q  159 tgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctctc 256  Q
    ||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||||    
T  29650455 tgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactctc 29650554  T
Q  257 actatcatgtctccacac----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
      | ||||||| ||||||          ||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  29650555 tttttcatgtccccacacaccatacaaccaccactaaatcacaaattcaacaaccactttggccaccactgcaccacca 29650633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 39522413 - 39522594
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| | | |||    
T  39522413 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcgcactc 39522512  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
     | || ||||||| ||||||           ||||||||||||||| ||||| |||||||||| |||||||  |||||||||    
T  39522513 cctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccacttttaccaccactgcaccacca 39522594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 10424941 - 10424888
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||| | ||||| ||||||||||||||||||  |||||||||    
T  10424941 caccaccactaaatcataaattcaacaaccactttgaccaccactgcaccacca 10424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 45235838 - 45235789
Alignment:
Q  276 accactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||| | ||||| ||||||||||||||||||| |||||||||    
T  45235838 accactaaatcataaattcaacaaccactttgaccaccattgcaccacca 45235789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 315
Target Start/End: Original strand, 36864981 - 36865024
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccat 315  Q
    |||||||||||||||| | ||||| |||||||||||||||||||    
T  36864981 caccaccactaaatcataaattcaacaaccactttgaccaccat 36865024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Original strand, 31835314 - 31835356
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||    
T  31835314 caccactactaaatcacaaattcaacaaccactttgaccacca 31835356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 36450766 - 36450867
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctca-acattagattatt-ttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||| ||||||||| | |||| ||  |||| ||||| ||||| ||| |||||| || ||||||||||||||||||| ||    
T  36450766 catgggaaagttgattatgtccattggattaaatgagtaacaaatctttatcctactctctcatacactagattgttgttttacactatcttccaccatc 36450865  T
Q  255 tc 256  Q
    ||    
T  36450866 tc 36450867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 10425069 - 10424957
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | || | |||| |||  |||| |||||| || ||||||| ||||||| | |||||| ||| |||    
T  10425069 catgggaaagttgatcatatccattagattaaatgaggaatatattcctatcatactctctcaaccactagattatttttttatattatctttcacactc 10424970  T
Q  255 tcactatcatgtc 267  Q
    || || |||||||    
T  10424969 tctctttcatgtc 10424957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 11417947 - 11417867
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattatttttt 236  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||||||||    
T  11417947 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 11417867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 23383415 - 23383447
Alignment:
Q  224 tagattattttttacactatcttccaccctctc 256  Q
    ||||||| |||||||||||||||||||||||||    
T  23383415 tagattaatttttacactatcttccaccctctc 23383447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 36864855 - 36864935
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattatttttt 236  Q
    |||| |||||||||| || | |||||||||||||| |||||| |||| |||  |||| |||||| || |||||||||||||    
T  36864855 catgagaaagttgatcatgtccattagattaaatgagaaacatattcctatcatactctctcaaccactagattatttttt 36864935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 267
Target Start/End: Complemental strand, 38143747 - 38143635
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||| | || | |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  38143747 catgggaaagttggtcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 38143648  T
Q  255 tcactatcatgtc 267  Q
    || || |||||||    
T  38143647 tctctttcatgtc 38143635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 38694740 - 38694820
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattatttttt 236  Q
    ||||| ||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||||||||    
T  38694740 catggaaaagttgatcatattcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 38694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 21471964 - 21471783
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  21471964 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 21471865  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| |||           ||||||||| |||||||| ||||| ||||||||||||||||||  |||||||||    
T  21471864 tctctttcatgtccccacacacccataccaccaccaccaaatcacaaattcaacaaccactttgaccaccactgcaccacca 21471783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 21471183 - 21471236
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  21471183 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 21471236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 37548166 - 37548222
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccaccaaac 328  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||| |||||||    
T  37548166 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcactaccaaac 37548222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 4479712 - 4479590
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagattattttttacactatcttccaccctctc 256  Q
    |||||||||||| || || | |||||||||||||| | |||| ||||||||  |||| |||| ||| || ||||||||||| | |||||| || | ||||    
T  4479712 catgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcatactctctccacactaaattattttttatattatctttcatcatctc 4479613  T
Q  257 actatcatgtctccacaccaccac 280  Q
     || ||||||| ||||||||||||    
T  4479612 tctttcatgtc-ccacaccaccac 4479590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 38834428 - 38834544
Alignment:
Q  160 gggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctctca 257  Q
    |||||||||||| || | |||||||||||||| | |||| ||| ||||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||||     
T  38834428 gggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaaccactagattatttttttatactatctttcacactctct 38834527  T
Q  258 ctatcatgtctccacac 274  Q
    || ||||||| ||||||    
T  38834528 ctttcatgtccccacac 38834544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 5319 - 5456
Alignment:
Q  125 ggtggcatttagcatgggtcaacggagtttt-tc-----atgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctc 218  Q
    |||||||||||||||||||||| | |||||| ||     || ||||||| ||| |||| |||||||||||||| ||||||||||||||| ||||| | ||    
T  5319 ggtggcatttagcatgggtcaatgaagttttctcccactataggaaagtagattatatccattagattaaatgagaaacacattcttatcctactctttc 5418  T
Q  219 aacattagattattttttacactatcttccaccctctc 256  Q
     | | ||||||||||||||   |||||||||| |||||    
T  5419 catactagattattttttatgatatcttccacactctc 5456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 15083328 - 15083147
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    |||| |||||||||| ||||  ||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  15083328 catgagaaagttgatcatatctattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 15083229  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| ||||||           ||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  15083228 tctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 15083147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 22579973 - 22580154
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| |||| |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  22579973 catgggaaagttgatcatatccattagattaaatgaggaacatattcctatcatactctctcaatcactagattatttttttatactatctttcacactc 22580072  T
Q  255 tcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    || || ||||||| | |           |||||||||||||||||| ||||| |||| |||||||||||||  |||||||||    
T  22580073 tctctttcatgtccctacacacccatatcaccaccactaaatcacaaattcaacaactactttgaccaccactgcaccacca 22580154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 22580706 - 22580653
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  22580706 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 22580653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 22587192 - 22587139
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  22587192 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 22587139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 33479863 - 33479916
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||||| ||||| ||||||||||||||||||  |||||||||    
T  33479863 caccaccactaaatcacaaattcaacaaccactttgaccaccactgcaccacca 33479916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 325
Target Start/End: Original strand, 15082434 - 15082616
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccct 253  Q
    |||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| ||    
T  15082434 tcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacact 15082533  T
Q  254 ctcactatcatgtctccac-----------accaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    ||| || ||||||| | ||           ||||||||||||||||| ||||| |||| |||||||||||||  |||||||||    
T  15082534 ctctctttcatgtccctacacacccatacaaccaccactaaatcacaaattcaacaactactttgaccaccactgcaccacca 15082616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 274
Target Start/End: Original strand, 33018204 - 33018324
Alignment:
Q  156 tcatgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccct 253  Q
    |||| ||||||||||| || | |||||||||||||| | |||| ||| ||||  |||| |||||| |||||||||| ||||||| |||||||| ||| ||    
T  33018204 tcattggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaaccattagattatttttttatactatctttcacact 33018303  T
Q  254 ctcactatcatgtctccacac 274  Q
    ||| || ||||||| ||||||    
T  33018304 ctctctttcatgtccccacac 33018324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 33480638 - 33480468
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaac-attagattatttttt-acactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| ||||||| | ||||||||||||| | |||||||| ||| |||    
T  33480638 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttatactatctttcacactc 33480539  T
Q  255 tcactatcatgtctccacac-----------caccactaaatcacatattcagcaaccactttgaccacca 314  Q
    || || ||||||  ||||||           ||||||||||||||| ||||| ||||||||||||||||||    
T  33480538 tctctttcatgttcccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccacca 33480468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 3542852 - 3542971
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta-ttttttacactatcttccaccctc 254  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || ||||||| ||||||| |||||||| ||| |||    
T  3542852 catgggaaagttgatcatgttcattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttttaaactatctttcacactc 3542951  T
Q  255 tcactatcatgtctccacac 274  Q
    || || ||||||| ||||||    
T  3542952 tctctttcatgtccccacac 3542971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 1034970 - 1035023
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccaccatcgcaccacca 325  Q
    |||||||||||||||| | ||||||||| |||||| ||||||| ||||||||||    
T  1034970 caccaccactaaatcatagattcagcaatcacttttaccaccaccgcaccacca 1035023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 257
Target Start/End: Original strand, 7193376 - 7193475
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaacattagatta-ttttttacactatcttccaccctct 255  Q
    ||||||||||||||| || | |||||||||||||| | |||| ||||||||  |||| |||||||   |||||| ||||||| |||||||| ||| ||||    
T  7193376 catgggaaagttgatcatctccattagattaaatgaggaacatattcttatcatactctctcaac--cagattatttttttatactatctttcacactct 7193473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 314
Target Start/End: Complemental strand, 9427918 - 9427876
Alignment:
Q  272 caccaccactaaatcacatattcagcaaccactttgaccacca 314  Q
    |||||||||||||||| | |||||||||||||||| |||||||    
T  9427918 caccaccactaaatcatagattcagcaaccacttttaccacca 9427876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 3543073 - 3542993
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagattatttttt 236  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||||||||    
T  3543073 catgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaaccactagattatttttt 3542993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 312
Target Start/End: Complemental strand, 170 - 1
Alignment:
Q  157 catgggaaagttgataatatgcattagattaaatgtgaaacacattcttatactactatctcaa-cattagatta--ttttttacactatcttccaccct 253  Q
    ||||||||||||||| || | |||||||||||||| | |||| |||| |||  |||| |||||| || |||||||  ||||||| |||||||| ||| ||    
T  170 catgggaaagttgattatgttcattagattaaatgaggaacatattcctatcatactctctcaaccactagattattttttttatactatctttcacact 71  T
Q  254 ctcactatcatgtctcca-----------caccaccactaaatcacatattcagcaaccactttgaccac 312  Q
    ||| || ||||||| |||           |||||||||||||||||| ||||| ||||||||||||||||    
T  70 ctctctttcatgtccccacacacccataccaccaccactaaatcacaaattcaacaaccactttgaccac 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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