View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7059_high_1 (Length: 510)
Name: NF7059_high_1
Description: NF7059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7059_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38887326 - 38887042
Alignment:
| Q |
1 |
tcctcccaggtgatttttagcaatcaccaccaactatccttccaaaacctagctacctttttcaccctttcccctcttaggtgcttccctaaaagcgttc |
100 |
Q |
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| T |
38887326 |
tcctcccaggtgatttttagcaatcaccaccaactatccttccaaaacctagctacctttttcaccctttcccctcttaggtgcttccctaaaagcgttc |
38887227 |
T |
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| Q |
101 |
ttttccacaaacatttcacttccttttctttttcaccaaaaacaaccaacaatctacaacctttcctttatcattaaagccaaccctagctatcatatat |
200 |
Q |
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| T |
38887226 |
ttttccacaaacatttcacttccttttctttttcaccaaaaacaaccaacaatctataacctttcctttatcattaaagccaaccctagctatcatatat |
38887127 |
T |
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| Q |
201 |
cttaaatgttccacaatttcctcta---ataagaaagaaccatatacaaatttatatttatatttatggaaggttttcacccatc |
282 |
Q |
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| T |
38887126 |
cttaaatgttccactatttcctctaataataagaaagaaccatatacaaatttatatttatatttatggaaggttttcacccatc |
38887042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 331 - 495
Target Start/End: Complemental strand, 38886999 - 38886835
Alignment:
| Q |
331 |
cccttctttttcttacactttccctatcactgcgactgcttctggtgttagcaccaacataactactgctccttacaccactacttctactactccatgg |
430 |
Q |
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| T |
38886999 |
cccttctttttcttacactttccctatcactgctactgcttctggtgttagcaccaacataactactgctccttacaccactacttctactactccatgg |
38886900 |
T |
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| Q |
431 |
atgaacagcagaatatggagtaagcttccacagagactacttgatcgcatcatagctttccttcc |
495 |
Q |
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| T |
38886899 |
atgaacagcagaatatggagtaagcttccacagagactacttgatcgcatcatagctttccttcc |
38886835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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