View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7059_high_2 (Length: 461)
Name: NF7059_high_2
Description: NF7059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7059_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 27195475 - 27195054
Alignment:
| Q |
18 |
catctaagggtataaacacgacctcaaagttctccccattttccttcagcttcttgtaaacctccttaagtttttgagtaaatagtgtgcatgctctgta |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
27195475 |
catctaaaggtataaacacgacctcaaagttctccccattttccttcagcttcttgtaaacctccttaagcttttgagtaaatagcgtgcatgctctgta |
27195376 |
T |
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| Q |
118 |
tgaagtcgcacagaaatgcaaaccaactgtctttccctcaagctcagagataggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27195375 |
tgaagtcgcacagaaatgcaaaccaactgtctttccctcaagctcagagataggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacc |
27195276 |
T |
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| Q |
218 |
acatgatctgtggcaaacaaccagataattactaaaggaacctactacatgatacagagtaaagttagtagcttactttatttccatcggatgatatcag |
317 |
Q |
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| T |
27195275 |
a-------------aaacaaccagataataacaaaaggaacctactacatgatacagagtaaagttagtagcttacttcatttccatcggatgatatcag |
27195189 |
T |
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| Q |
318 |
aaagtcacgggaacgagaggccaatatcgatctcaaggactggttcctcttagcttcctcttcttgatctttcaactcttgaaccctttctgatgtgaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
27195188 |
aaagtcacgggaacgagaggccaatatcgatctcaaggactggttcctcttagcttcctcttctatatctttcaactcttgaaccctttttgatgtgaaa |
27195089 |
T |
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| Q |
418 |
gggtatccttcagctccataatcacggatgatgtc |
452 |
Q |
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| T |
27195088 |
gggtatgcttcagctccataaacacggataatgtc |
27195054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 27210717 - 27210284
Alignment:
| Q |
18 |
catctaagggtataaacacgacctcaaagttctccccattttccttcagcttcttgtaaacctccttaagtttttgagtaaatagtgtgcatgctctgta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||| ||||| | |||| |
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| T |
27210717 |
catctaagggtataaacacgacctcaaagttctccccattttccttcaggttgttgtaaacctccttaagcttttgattaaatagcacgcatggtttgta |
27210618 |
T |
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| Q |
118 |
tgaagtcgcacagaaatgcaaaccaactgtctttccctcaagctcagagataggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacc |
217 |
Q |
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| T |
27210617 |
tgaagtcgtaaagaaatgcaaaccaactgtctttccctcaatctcagagataggtatctgttgtgcacatgaaaggaaaagtcagattggtaaatgaacc |
27210518 |
T |
|
| Q |
218 |
acatgatctgtggcaaacaaccagataattactaaaggaacctactacatgatacagagtaaagttagtagcttactttatttccatcggatgatatcag |
317 |
Q |
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|||||||||||||||||||| |||||||| |||||| |||||||||| || |||| |||| |||||| | |||||||| |||| |||||||||||||| |
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| T |
27210517 |
acatgatctgtggcaaacaaacagataataactaaacgaacctactatatcatactgagttaagttattcgcttacttcgtttctatcggatgatatcac |
27210418 |
T |
|
| Q |
318 |
aaagtcacgggaacgagaggccaatatcgatctcaaggactggttcctcttagcttcctcttcttgatctttcaactcttgaaccctttctgatgtgaaa |
417 |
Q |
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|||||||||| | | |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||| |
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| T |
27210417 |
aaagtcacggtagctagagaccaatgtcgatctcaaggactggttcctcatagcttcctcttctatatctttcaactcttgaaccttttttgatgtgaaa |
27210318 |
T |
|
| Q |
418 |
gggtatccttcagctccataatcacggatgatgt |
451 |
Q |
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||||||||||||| |||||| |||||||| |||| |
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| T |
27210317 |
gggtatccttcagttccatattcacggataatgt |
27210284 |
T |
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