View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7059_high_7 (Length: 250)
Name: NF7059_high_7
Description: NF7059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7059_high_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 23095662 - 23095906
Alignment:
| Q |
7 |
tatggagttgagtctataaacatatttagcgattaccttatgaaatatt---tattggtcttattataaaatatgcatttaggcaggaccgccaaactca |
103 |
Q |
| |
|
|||||||||||| ||||||||| |||||| || | ||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
23095662 |
tatggagttgaggctataaacacatttagtgaatgccttatgaattattatttattggtcttattacataatatgcatttaggcaggaccgccaaactca |
23095761 |
T |
|
| Q |
104 |
agccttaagtttgcgaacttgtacagactcaggtctaccaaatcctggccaacttagactatttccatccctaacttcggctaagcaacaatacggacac |
203 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||| ||||| |
|
|
| T |
23095762 |
agccttaagtttgcgaacttgaacagact--ggtctaccaaatcccggccaacctagactatttccacccctaacttcggctagccaaaaataccgacac |
23095859 |
T |
|
| Q |
204 |
aatttattgaaagcacgtgattgagcatttcatataactagaaatgc |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
23095860 |
tatttattgaaagcacgtgattgaacatttcatataactagaaatgc |
23095906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 47345353 - 47345246
Alignment:
| Q |
128 |
agactcaggtctaccaaatcctggccaacttagactatttccatccctaacttcggctaagcaacaatacggacacaatttattgaaagcacgtgattga |
227 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| |
|
|
| T |
47345353 |
agactcaggtctaccaaatcccggccaacctagactatttccacccctaacttcggctaagcaaaaataccaacacaacttattgaaagcacgtgattga |
47345254 |
T |
|
| Q |
228 |
gcatttca |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
47345253 |
gcatttca |
47345246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University