View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7059_high_8 (Length: 249)
Name: NF7059_high_8
Description: NF7059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7059_high_8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 33985768 - 33986010
Alignment:
| Q |
6 |
tttggtgttgactagcattgacctccaccactttattattattttttgatcaatagacgaaatgacaaacatcgtctaaaacatacacctacaactgtaa |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33985768 |
tttggtgttgactaacattgacctccaccactttattattattttttggtcaatagacgaaatgacaaacatcgtctaaaacatacacctacaact-taa |
33985866 |
T |
|
| Q |
106 |
ggtttcaagttcaaattcgaatgaaggtgtccaacctaacaatatcgatattgtcagttgagctagatctttcagactccatcactttattataatacta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33985867 |
ggtttcaagttcaaattcgaatgaaggtatccaacctaacaatatcgatattgtcagttgagctagatctttcagactccatcactctattataatacta |
33985966 |
T |
|
| Q |
206 |
ttcgactaaattataatatttaatatttttaaactaataaaaaa |
249 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33985967 |
ttagactaaattataatatttaatatttttaaactaataaaaaa |
33986010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 45312261 - 45312218
Alignment:
| Q |
127 |
tgaaggtgtccaacctaacaatatcgatattgtcagttgagcta |
170 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
45312261 |
tgaaggtgtccaacctaacaatttcggcattgtcagttgagcta |
45312218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 7567500 - 7567429
Alignment:
| Q |
98 |
aactgtaaggtttcaagttcaaattcgaatgaaggtgtccaacctaacaatatcgatattgtcagttgagct |
169 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
7567500 |
aactgtaaggttttaggttcaaattcaaatgaagatgtccaatctaacaatatcgacattgtcagttgagct |
7567429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 39228836 - 39228768
Alignment:
| Q |
104 |
aaggtttcaagttcaaattcgaatgaaggtgtccaacctaacaatatcgatattgtcagttgagctaga |
172 |
Q |
| |
|
||||||| | ||||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
39228836 |
aaggtttaaggttcaaacccgaatgaaaatgtccagcttaacaatatcggtattgtcagttgagctaga |
39228768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 4209567 - 4209612
Alignment:
| Q |
126 |
atgaaggtgtccaacctaacaatatcgatattgtcagttgagctag |
171 |
Q |
| |
|
||||| |||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
4209567 |
atgaatgtgtacaacctaacaatatcggtattgtcggttgagctag |
4209612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 5104736 - 5104772
Alignment:
| Q |
135 |
tccaacctaacaatatcgatattgtcagttgagctag |
171 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5104736 |
tccaacctaacaatataaatattgtcagttgagctag |
5104772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 55571456 - 55571496
Alignment:
| Q |
137 |
caacctaacaatatcgatattgtcagttgagctagatcttt |
177 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
55571456 |
caacctaacaatatcgatattgtcagttaagttagaacttt |
55571496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University