View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_high_17 (Length: 229)
Name: NF7060_high_17
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_high_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 43429990 - 43430213
Alignment:
| Q |
6 |
aagttgaaaagaggtttagctgaagaaactctgtaattaatagagggctttataaatggactgtcccaaatgattctaatttatgtattttcctttatta |
105 |
Q |
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| T |
43429990 |
aagttgaaaagaggtttagctgaagaaactctgtaattaatagaggactttataaatggactgtcccaaatgattctaatttatgtattttcctttatta |
43430089 |
T |
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| Q |
106 |
agagacttacacaaattgcaatgtttttgacttacaatcacacatacaggacataaaaacatagaagacgcagttgattttcaactttctgttactttac |
205 |
Q |
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| T |
43430090 |
agagacttacacaaattgcaatgtttttgacttacaatcacacatacaggacataaaaacatagaagacgcagttgattttcaactttctgttactttac |
43430189 |
T |
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| Q |
206 |
ctaaaaagaacattggtacagtgt |
229 |
Q |
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| T |
43430190 |
ctaaaaagaacattggtacagtgt |
43430213 |
T |
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Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 15582134 - 15581964
Alignment:
| Q |
44 |
aatagagggctttataaatggactgtcccaaatgattctaatttatgtattttcctttattaagagacttacacaaattgcaatgt-ttttgacttacaa |
142 |
Q |
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| T |
15582134 |
aatagaggactttacatatggaccgtctcatatgatcctaatttatgttttttactttattaagagccttgcataaattgcaatgttttttgacttatga |
15582035 |
T |
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| Q |
143 |
tcacacatacaggacataaaaacatagaagacgcagttgattttcaactttctgttactttacctaaaaagaaca |
217 |
Q |
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| T |
15582034 |
t--cacatagaggacataaaaac--cgaaaatgcaattgattttcaactttccgttactttacatgaaaagaaca |
15581964 |
T |
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