View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_high_18 (Length: 228)
Name: NF7060_high_18
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_high_18 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 41752764 - 41752573
Alignment:
| Q |
3 |
atcacatagtgcatgtcagcatagatccttagttttaggaaaactgaacacatact-------gaaaaacagaataatgtaatctccaaatttcttgaac |
95 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |
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| T |
41752764 |
atcaaatagtgcatgtcagcatagatccttagttttaggaaaactgaacacataatacctatagaaaaacagaataatgtaatctccaaatttcttaaac |
41752665 |
T |
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| Q |
96 |
tatgcgtacttcaagaagttcacttgattaacaactcttactacactgattatccattattctataccctctctaacatatatggtgacatg |
187 |
Q |
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| T |
41752664 |
tatgcgtacttcaagaagttcacttgattaacaactcttactacactaattatccattattctataccctctctaacatatatggtgacatg |
41752573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 41752412 - 41752369
Alignment:
| Q |
185 |
atgtttccatttagagagattgcagcaaaatactatttgcaaaa |
228 |
Q |
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| T |
41752412 |
atgtttccatttagagagattgcagcaaaaaattatttgcaaaa |
41752369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 34225030 - 34225199
Alignment:
| Q |
59 |
gaaaaacagaataatgtaatctccaaatttcttgaactatgcgtacttcaagaagttcacttgattaacaactcttactacactgattatccattattct |
158 |
Q |
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| T |
34225030 |
gaaaaacagaataatgtaatctccaaatttcttgaactatgcatacttcaagaagttcacttgattaacaactcttactacactaattatccattattct |
34225129 |
T |
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| Q |
159 |
ataccctctctaacatatatggtgacatgtttccatttagagagattgcagcaaaatactatttgcaaaa |
228 |
Q |
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| T |
34225130 |
ataccctctctaacatatatagtgacatgtttccatttggagagatggcagcaaaatattatttgcaaaa |
34225199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 34229158 - 34229327
Alignment:
| Q |
59 |
gaaaaacagaataatgtaatctccaaatttcttgaactatgcgtacttcaagaagttcacttgattaacaactcttactacactgattatccattattct |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34229158 |
gaaaaacagaataatgtaatctccaaatttcttgaactatgcatacttcaagaagttcacttgattaacaactcttactacactaattatccattattct |
34229257 |
T |
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| Q |
159 |
ataccctctctaacatatatggtgacatgtttccatttagagagattgcagcaaaatactatttgcaaaa |
228 |
Q |
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| T |
34229258 |
ataccctctctaacatatatagtgacatgtttccatttggagagatggcagcaaaatattatttgcaaaa |
34229327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34224954 - 34225005
Alignment:
| Q |
3 |
atcacatagtgcatgtcagcatagatccttagttttaggaaaactgaacaca |
54 |
Q |
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| T |
34224954 |
atcaaatagtgcatctcagcatagatccttagttttaggaaaactgaacaca |
34225005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 34229082 - 34229133
Alignment:
| Q |
3 |
atcacatagtgcatgtcagcatagatccttagttttaggaaaactgaacaca |
54 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34229082 |
atcaaatagtgcatctcagcatagatccttagttttaggaaaactgaacaca |
34229133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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