View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7060_high_7 (Length: 307)
Name: NF7060_high_7
Description: NF7060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7060_high_7 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 27526809 - 27527101
Alignment:
| Q |
1 |
gttctatcattctcttgtcttcatgtatcttgagccccgtttggacaaacaacttaattagacacttatagcaaaaacgcttgtgtagaaactaattcaa |
100 |
Q |
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| T |
27526809 |
gttctatcattctcttgtcttcatgtatcttgagccccgtttggacaaacaacttaattagacacttatagcaaaaacgcttgtgtagaaactaattcaa |
27526908 |
T |
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| Q |
101 |
actggactttgatttgtgcgaaatcatgtattgtacctggcttcnnnnnnncacctgtgaaggtttattgcaggctcctcttcttctaggttgtgatgtt |
200 |
Q |
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| T |
27526909 |
acaggactttgatttgtgcgaaatcatgtcatgtacctggcttctttttttcacctttgaaggtttattgcaggctcctcttcttctaggttgtgatgtt |
27527008 |
T |
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| Q |
201 |
agaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagtcaaccaaggtgatgcataatttgagtcattttgtgat |
293 |
Q |
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| T |
27527009 |
agaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagttaaccaaggtgatgcataatttgagtcattttgtgat |
27527101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 27532730 - 27532857
Alignment:
| Q |
152 |
cacctgtgaaggtttattgcaggctcctcttcttctaggttgtgatgttagaaatgtgactaaagagaccatggagatagtctctaataaggaagttatt |
251 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
27532730 |
caccggtgaaggtttattgcaggctcctcttcttctaggctgtgatgttagaaatgtgactaaagagaccttggagatagtttctaataaggaagttatt |
27532829 |
T |
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| Q |
252 |
gcagtcaaccaaggtgatgcataatttg |
279 |
Q |
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| T |
27532830 |
gcagttaaccaaggtgatgcataatttg |
27532857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0279 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 20689 - 20982
Alignment:
| Q |
1 |
gttctatcattctcttgtcttcatgtatcttgagcccc-gtttggacaaacaacttaattagacacttatagcaaaaacgcttgtgtagaaactaattca |
99 |
Q |
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||||||||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20689 |
gttctatcattctctggtcttcatgtatcctgagcccccgtttggacaaaccacttaattagacacttatagcaaaaacgcttgtgtagaaactaattca |
20788 |
T |
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| Q |
100 |
aactggactttgatttgtgcgaaatcatgtattgtacctggcttcnnnnnnncacctgtgaaggtttattgcaggctcctcttcttctaggttgtgatgt |
199 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20789 |
aacaggactttgatttgtgcgaaatcatgtcatgtacctggcttctttttttcacctttgaaggtttattgcaggctcctcttcttctaggttgtgatgt |
20888 |
T |
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| Q |
200 |
tagaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagtcaaccaaggtgatgcataatttgagtcattttgtgat |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20889 |
tagaaatgtgactaaagagaccatggagatagtctctaataaggaagttattgcagttaaccaaggtgatgcataatttgagtcattttgtgat |
20982 |
T |
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